Hb_002391_240

Information

Type -
Description -
Location Contig2391: 151886-153010
Sequence    

Annotation

kegg
ID rcu:RCOM_0017310
description hypothetical protein
nr
ID XP_002530731.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q292F9
description Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1
trembl
ID B9SXL2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017310 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ganglioside-induced differentiation-associated protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25061: 151634-152712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000193_070 0.0557663127 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
3 Hb_000103_300 0.0634959116 - - PREDICTED: perakine reductase-like [Jatropha curcas]
4 Hb_000152_570 0.06755893 - - 21 kDa protein precursor, putative [Ricinus communis]
5 Hb_002284_060 0.0907609747 - - sugar transporter, putative [Ricinus communis]
6 Hb_113766_010 0.0955588463 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
7 Hb_007370_010 0.0981707608 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
8 Hb_169077_030 0.102374804 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
9 Hb_004466_090 0.103607322 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006154_010 0.1042215743 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
11 Hb_012395_060 0.1057271767 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
12 Hb_003894_180 0.1066824931 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
13 Hb_026198_020 0.1067561429 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
14 Hb_001410_080 0.1077132972 - - ring finger protein, putative [Ricinus communis]
15 Hb_004374_030 0.108575848 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_002518_230 0.1088635837 - - -
17 Hb_002750_040 0.1128509479 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
18 Hb_006992_010 0.11488516 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_003376_140 0.116904194 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
20 Hb_000963_120 0.1171024885 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_240 Hb_002391_240 Hb_000193_070 Hb_000193_070 Hb_002391_240--Hb_000193_070 Hb_000103_300 Hb_000103_300 Hb_002391_240--Hb_000103_300 Hb_000152_570 Hb_000152_570 Hb_002391_240--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_002391_240--Hb_002284_060 Hb_113766_010 Hb_113766_010 Hb_002391_240--Hb_113766_010 Hb_007370_010 Hb_007370_010 Hb_002391_240--Hb_007370_010 Hb_000193_070--Hb_000152_570 Hb_000193_070--Hb_000103_300 Hb_000193_070--Hb_002284_060 Hb_006154_010 Hb_006154_010 Hb_000193_070--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000193_070--Hb_169077_030 Hb_000103_300--Hb_000152_570 Hb_000103_300--Hb_002284_060 Hb_000103_300--Hb_006154_010 Hb_000103_300--Hb_169077_030 Hb_000152_570--Hb_002284_060 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_000152_570--Hb_007370_010 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_003894_180 Hb_113766_010--Hb_000103_300 Hb_026198_020 Hb_026198_020 Hb_113766_010--Hb_026198_020 Hb_113766_010--Hb_000152_570 Hb_113766_010--Hb_002284_060 Hb_002750_040 Hb_002750_040 Hb_113766_010--Hb_002750_040 Hb_003633_170 Hb_003633_170 Hb_007370_010--Hb_003633_170 Hb_007370_010--Hb_003894_180 Hb_007370_010--Hb_169077_030 Hb_031224_010 Hb_031224_010 Hb_007370_010--Hb_031224_010 Hb_007370_010--Hb_000103_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 1.67011 2.37121 11.8696 0.171714 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.5064 7.52804

CAGE analysis