Hb_002391_290

Information

Type -
Description -
Location Contig2391: 182654-186365
Sequence    

Annotation

kegg
ID rcu:RCOM_0783240
description hypothetical protein
nr
ID XP_012065324.1
description PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
swissprot
ID Q93VH2
description Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
trembl
ID A0A067L5Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22334 PE=4 SV=1
Gene Ontology
ID GO:0004518
description bifunctional nuclease 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25065: 183000-183336 , PASA_asmbl_25066: 183992-184818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_290 0.0 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
2 Hb_001862_140 0.0640974546 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
3 Hb_000990_090 0.0666452886 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
4 Hb_000004_030 0.0727398259 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
5 Hb_000110_190 0.0762114721 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
6 Hb_000345_360 0.0763341962 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
7 Hb_001677_080 0.0846563895 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
8 Hb_000238_030 0.0881399386 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001488_220 0.0902244251 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_004659_020 0.0917169685 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
11 Hb_009529_030 0.0918389801 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
12 Hb_001442_060 0.0937773763 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
13 Hb_000022_020 0.0940616354 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
14 Hb_000264_350 0.0962379132 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
15 Hb_000362_150 0.0967014929 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
16 Hb_025477_040 0.1005465676 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
17 Hb_012340_070 0.1011197667 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
18 Hb_004875_030 0.1020151632 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
19 Hb_000872_010 0.1023232814 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
20 Hb_000062_020 0.1027686168 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002391_290 Hb_002391_290 Hb_001862_140 Hb_001862_140 Hb_002391_290--Hb_001862_140 Hb_000990_090 Hb_000990_090 Hb_002391_290--Hb_000990_090 Hb_000004_030 Hb_000004_030 Hb_002391_290--Hb_000004_030 Hb_000110_190 Hb_000110_190 Hb_002391_290--Hb_000110_190 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360 Hb_001677_080 Hb_001677_080 Hb_002391_290--Hb_001677_080 Hb_001862_140--Hb_000110_190 Hb_001862_140--Hb_000004_030 Hb_001862_140--Hb_001677_080 Hb_001862_140--Hb_000990_090 Hb_012340_070 Hb_012340_070 Hb_001862_140--Hb_012340_070 Hb_000990_090--Hb_000345_360 Hb_009529_030 Hb_009529_030 Hb_000990_090--Hb_009529_030 Hb_000785_040 Hb_000785_040 Hb_000990_090--Hb_000785_040 Hb_004875_030 Hb_004875_030 Hb_000990_090--Hb_004875_030 Hb_004545_090 Hb_004545_090 Hb_000990_090--Hb_004545_090 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_000872_010 Hb_000872_010 Hb_000110_190--Hb_000872_010 Hb_002968_080 Hb_002968_080 Hb_000110_190--Hb_002968_080 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000110_190--Hb_056691_060 Hb_000345_360--Hb_004875_030 Hb_004223_290 Hb_004223_290 Hb_000345_360--Hb_004223_290 Hb_000345_360--Hb_009529_030 Hb_000345_360--Hb_041828_010 Hb_001492_020 Hb_001492_020 Hb_001677_080--Hb_001492_020 Hb_002828_020 Hb_002828_020 Hb_001677_080--Hb_002828_020 Hb_002235_170 Hb_002235_170 Hb_001677_080--Hb_002235_170 Hb_001677_080--Hb_012340_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83936 2.52026 2.43704 6.24519 4.39905 5.58903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25625 1.44476 2.44245 5.76742 4.2244

CAGE analysis