Hb_002391_300

Information

Type -
Description -
Location Contig2391: 188753-192220
Sequence    

Annotation

kegg
ID mtr:MTR_5g023060
description Scaffold attachment factor B1
nr
ID XP_007157858.1
description hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID G7JYS1
description RNA-binding (RRM/RBD/RNP motif) family protein OS=Medicago truncatula GN=MTR_5g023060 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor sr45a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25067: 189962-190981 , PASA_asmbl_25068: 188872-191972 , PASA_asmbl_25069: 189887-191972 , PASA_asmbl_25070: 192998-193233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_300 0.0 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
2 Hb_000373_240 0.0465136625 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
3 Hb_003406_010 0.0569870991 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
4 Hb_000926_280 0.0602944195 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
5 Hb_004440_090 0.0611434535 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
6 Hb_012092_010 0.062314951 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
7 Hb_007218_080 0.0632088562 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
8 Hb_002149_020 0.0661281567 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
9 Hb_003030_070 0.0668521727 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_000089_220 0.0685362188 - - PREDICTED: protein FAM133-like [Populus euphratica]
11 Hb_009557_070 0.0704543818 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002081_130 0.0710610086 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_000395_170 0.0714546509 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
14 Hb_012008_020 0.0734181324 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
15 Hb_003010_030 0.0739175833 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
16 Hb_000300_060 0.0739975014 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
17 Hb_063090_010 0.07423938 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_000690_130 0.0742398018 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
19 Hb_001006_140 0.074243816 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
20 Hb_003175_010 0.0752243373 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002391_300 Hb_002391_300 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_000373_240--Hb_003406_010 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_003175_010 Hb_003175_010 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_000465_430 Hb_000465_430 Hb_012092_010--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_012092_010--Hb_002495_040 Hb_003030_070 Hb_003030_070 Hb_012092_010--Hb_003030_070 Hb_001936_080 Hb_001936_080 Hb_012092_010--Hb_001936_080 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_007218_080--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0799 23.5285 31.463 27.2073 69.4224 84.2744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.1541 62.8843 43.5388 33.0586 24.7647

CAGE analysis