Hb_002391_320

Information

Type -
Description -
Location Contig2391: 194877-201994
Sequence    

Annotation

kegg
ID rcu:RCOM_0783110
description phospholipase d delta, putative (EC:3.1.4.4)
nr
ID XP_012065321.1
description PREDICTED: phospholipase D delta-like [Jatropha curcas]
swissprot
ID Q9C5Y0
description Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2
trembl
ID A0A067LHQ6
description Phospholipase D OS=Jatropha curcas GN=JCGZ_22331 PE=3 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25072: 194842-201479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_320 0.0 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
2 Hb_000115_360 0.1037618989 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
3 Hb_002016_140 0.109337519 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
4 Hb_012762_040 0.1100251917 - - big map kinase/bmk, putative [Ricinus communis]
5 Hb_007101_260 0.1103233187 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
6 Hb_001250_080 0.1140255868 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
7 Hb_004129_010 0.1152588355 - - aspartate aminotransferase, putative [Ricinus communis]
8 Hb_000753_110 0.1158197965 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
9 Hb_032568_010 0.126283124 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
10 Hb_009449_100 0.1292974163 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
11 Hb_003050_360 0.1295893539 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
12 Hb_112064_010 0.1311659302 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
13 Hb_000057_130 0.1312250477 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
14 Hb_001754_050 0.1315147697 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_007894_070 0.1342091047 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
16 Hb_004943_040 0.1361188116 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
17 Hb_000622_060 0.1365567881 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
18 Hb_001865_100 0.1393974944 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
19 Hb_000227_280 0.1397919949 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
20 Hb_054865_050 0.1406740228 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002391_320 Hb_002391_320 Hb_000115_360 Hb_000115_360 Hb_002391_320--Hb_000115_360 Hb_002016_140 Hb_002016_140 Hb_002391_320--Hb_002016_140 Hb_012762_040 Hb_012762_040 Hb_002391_320--Hb_012762_040 Hb_007101_260 Hb_007101_260 Hb_002391_320--Hb_007101_260 Hb_001250_080 Hb_001250_080 Hb_002391_320--Hb_001250_080 Hb_004129_010 Hb_004129_010 Hb_002391_320--Hb_004129_010 Hb_033152_110 Hb_033152_110 Hb_000115_360--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_000115_360--Hb_000622_060 Hb_003226_200 Hb_003226_200 Hb_000115_360--Hb_003226_200 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_001329_070 Hb_001329_070 Hb_002016_140--Hb_001329_070 Hb_000589_170 Hb_000589_170 Hb_002016_140--Hb_000589_170 Hb_012851_020 Hb_012851_020 Hb_002016_140--Hb_012851_020 Hb_000753_110 Hb_000753_110 Hb_002016_140--Hb_000753_110 Hb_000206_230 Hb_000206_230 Hb_002016_140--Hb_000206_230 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_000000_480 Hb_000000_480 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_000028_430 Hb_000028_430 Hb_001250_080--Hb_000028_430 Hb_004943_040 Hb_004943_040 Hb_001250_080--Hb_004943_040 Hb_000570_020 Hb_000570_020 Hb_001250_080--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_001250_080--Hb_000928_120 Hb_000800_010 Hb_000800_010 Hb_001250_080--Hb_000800_010 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28626 30.1604 48.9042 47.4061 0.937125 3.03489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.12083 13.2162 9.78965 20.9148 43.879

CAGE analysis