Hb_002391_340

Information

Type -
Description -
Location Contig2391: 211536-213082
Sequence    

Annotation

kegg
ID rcu:RCOM_0782880
description DNA-directed RNA polymerase II largest subunit, putative
nr
ID ACD63086.1
description RNA polymerase II largest subunit [Liriodendron tulipifera]
swissprot
ID P18616
description DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis thaliana GN=NRPB1 PE=1 SV=3
trembl
ID B7SNX0
description DNA-directed RNA polymerase (Fragment) OS=Liriodendron tulipifera GN=rpb1 PE=2 SV=1
Gene Ontology
ID GO:0005665
description rna polymerase ii largest subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_340 0.0 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
2 Hb_001232_070 0.0137810545 - - conserved hypothetical protein [Ricinus communis]
3 Hb_065774_010 0.0347935089 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
4 Hb_001437_170 0.040651761 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
5 Hb_006483_040 0.0429875289 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
6 Hb_001472_150 0.0440395038 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
7 Hb_096907_010 0.046979665 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_000160_120 0.0479687261 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000329_120 0.0489999768 - - 21 kDa protein precursor, putative [Ricinus communis]
10 Hb_003528_100 0.0514508296 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_003151_020 0.0605152423 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_154038_010 0.0611781833 - - cytochrome P450, putative [Ricinus communis]
13 Hb_007317_030 0.0651539939 - - -
14 Hb_064445_020 0.0656797945 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
15 Hb_000115_030 0.0720271722 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 42 [Jatropha curcas]
16 Hb_005839_040 0.0722371711 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
17 Hb_000268_050 0.0725971207 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
18 Hb_008453_050 0.0727785793 - - PREDICTED: peroxidase 64 [Jatropha curcas]
19 Hb_000046_400 0.0744616189 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001593_040 0.0752581183 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002391_340 Hb_002391_340 Hb_001232_070 Hb_001232_070 Hb_002391_340--Hb_001232_070 Hb_065774_010 Hb_065774_010 Hb_002391_340--Hb_065774_010 Hb_001437_170 Hb_001437_170 Hb_002391_340--Hb_001437_170 Hb_006483_040 Hb_006483_040 Hb_002391_340--Hb_006483_040 Hb_001472_150 Hb_001472_150 Hb_002391_340--Hb_001472_150 Hb_096907_010 Hb_096907_010 Hb_002391_340--Hb_096907_010 Hb_000329_120 Hb_000329_120 Hb_001232_070--Hb_000329_120 Hb_001232_070--Hb_006483_040 Hb_001232_070--Hb_001472_150 Hb_001232_070--Hb_065774_010 Hb_001232_070--Hb_001437_170 Hb_003528_100 Hb_003528_100 Hb_065774_010--Hb_003528_100 Hb_007317_030 Hb_007317_030 Hb_065774_010--Hb_007317_030 Hb_065774_010--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_065774_010--Hb_000160_120 Hb_001437_170--Hb_096907_010 Hb_001437_170--Hb_000160_120 Hb_001437_170--Hb_003528_100 Hb_000115_030 Hb_000115_030 Hb_001437_170--Hb_000115_030 Hb_154038_010 Hb_154038_010 Hb_006483_040--Hb_154038_010 Hb_064445_020 Hb_064445_020 Hb_006483_040--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_006483_040--Hb_008453_050 Hb_006483_040--Hb_001472_150 Hb_001472_150--Hb_154038_010 Hb_001472_150--Hb_064445_020 Hb_001472_150--Hb_008453_050 Hb_096907_010--Hb_000160_120 Hb_096907_010--Hb_000115_030 Hb_096907_010--Hb_003528_100 Hb_096907_010--Hb_065774_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0639473 0.0946751 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.202493

CAGE analysis