Hb_002392_040

Information

Type -
Description -
Location Contig2392: 35157-37868
Sequence    

Annotation

kegg
ID rcu:RCOM_0255530
description hypothetical protein
nr
ID XP_002530101.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25086: 34815-37694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002392_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000983_100 0.0853426367 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
3 Hb_002897_060 0.0990289848 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
4 Hb_007229_060 0.100592939 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
5 Hb_026988_020 0.112324737 - - outward rectifying K+ channel [Hevea brasiliensis]
6 Hb_005000_290 0.1161116149 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
7 Hb_001366_220 0.1161868652 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000156_100 0.1183909529 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
9 Hb_025087_010 0.1210060331 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
10 Hb_001143_090 0.1213419543 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
11 Hb_004882_020 0.1222920879 - - -
12 Hb_003943_030 0.124660998 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
13 Hb_000091_090 0.124971669 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
14 Hb_001606_070 0.1253408563 - - fimbrin, putative [Ricinus communis]
15 Hb_000861_040 0.125487453 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
16 Hb_000614_070 0.1269975601 - - -
17 Hb_001677_110 0.1280512671 - - Protein YIPF1, putative [Ricinus communis]
18 Hb_007666_020 0.1282651906 - - alkaline phytoceramidase, putative [Ricinus communis]
19 Hb_000809_040 0.1297670888 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
20 Hb_000032_220 0.1299629484 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002392_040 Hb_002392_040 Hb_000983_100 Hb_000983_100 Hb_002392_040--Hb_000983_100 Hb_002897_060 Hb_002897_060 Hb_002392_040--Hb_002897_060 Hb_007229_060 Hb_007229_060 Hb_002392_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_002392_040--Hb_026988_020 Hb_005000_290 Hb_005000_290 Hb_002392_040--Hb_005000_290 Hb_001366_220 Hb_001366_220 Hb_002392_040--Hb_001366_220 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_000983_100--Hb_026988_020 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_002936_050 Hb_002936_050 Hb_002897_060--Hb_002936_050 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_000861_040 Hb_000861_040 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_015934_020 Hb_015934_020 Hb_005000_290--Hb_015934_020 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_005000_290--Hb_183963_020 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_005000_290--Hb_002307_090 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7281 7.24032 1.04558 4.14029 23.9569 21.5185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3624 29.9775 47.3737 7.58261 0.557965

CAGE analysis