Hb_002392_060

Information

Type -
Description -
Location Contig2392: 82766-86416
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID ADJ18449.1
description gag/pol protein [Bryonia dioica]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID E2GK51
description Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002392_060 0.0 - - gag/pol protein [Bryonia dioica]
2 Hb_002928_080 0.0006419229 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
3 Hb_100821_010 0.0059047827 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_000757_080 0.0177089992 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
5 Hb_181132_010 0.0211927624 - - -
6 Hb_001433_010 0.0281758514 - - -
7 Hb_020805_020 0.0313733077 - - -
8 Hb_003878_160 0.0356549491 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008948_030 0.0396799529 - - hypothetical protein RCOM_0224470 [Ricinus communis]
10 Hb_002240_030 0.0408775961 - - -
11 Hb_003589_010 0.04184457 - - -
12 Hb_000046_130 0.044919003 - - Peroxidase 27 precursor, putative [Ricinus communis]
13 Hb_155103_010 0.0451923456 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_047735_010 0.0998718808 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
15 Hb_002495_020 0.1072196736 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
16 Hb_001488_050 0.1309408639 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
17 Hb_007809_070 0.1758943038 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022790_030 0.1947899337 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
19 Hb_001948_010 0.2731165617 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_008071_030 0.302569105 - - -

Gene co-expression network

sample Hb_002392_060 Hb_002392_060 Hb_002928_080 Hb_002928_080 Hb_002392_060--Hb_002928_080 Hb_100821_010 Hb_100821_010 Hb_002392_060--Hb_100821_010 Hb_000757_080 Hb_000757_080 Hb_002392_060--Hb_000757_080 Hb_181132_010 Hb_181132_010 Hb_002392_060--Hb_181132_010 Hb_001433_010 Hb_001433_010 Hb_002392_060--Hb_001433_010 Hb_020805_020 Hb_020805_020 Hb_002392_060--Hb_020805_020 Hb_002928_080--Hb_100821_010 Hb_002928_080--Hb_000757_080 Hb_002928_080--Hb_181132_010 Hb_002928_080--Hb_001433_010 Hb_002928_080--Hb_020805_020 Hb_100821_010--Hb_000757_080 Hb_100821_010--Hb_181132_010 Hb_003878_160 Hb_003878_160 Hb_100821_010--Hb_003878_160 Hb_008948_030 Hb_008948_030 Hb_100821_010--Hb_008948_030 Hb_000757_080--Hb_181132_010 Hb_000757_080--Hb_003878_160 Hb_000757_080--Hb_008948_030 Hb_181132_010--Hb_003878_160 Hb_181132_010--Hb_008948_030 Hb_003589_010 Hb_003589_010 Hb_181132_010--Hb_003589_010 Hb_001433_010--Hb_020805_020 Hb_002240_030 Hb_002240_030 Hb_001433_010--Hb_002240_030 Hb_000046_130 Hb_000046_130 Hb_001433_010--Hb_000046_130 Hb_001433_010--Hb_100821_010 Hb_020805_020--Hb_002240_030 Hb_020805_020--Hb_000046_130 Hb_020805_020--Hb_100821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108188 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00770687 0

CAGE analysis