Hb_002395_040

Information

Type -
Description -
Location Contig2395: 44120-45043
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID ABK95950.1
description unknown [Populus trichocarpa]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A9PHU7
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25090: 44101-44939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002395_040 0.0 - - unknown [Populus trichocarpa]
2 Hb_000907_010 0.0638164657 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
3 Hb_020154_010 0.0724870541 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_025628_010 0.0813536815 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
5 Hb_000540_180 0.0815427204 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
6 Hb_006663_080 0.0972649284 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
7 Hb_000373_140 0.1008073693 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
8 Hb_079902_010 0.1093829418 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
9 Hb_003625_030 0.1101157018 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
10 Hb_004683_030 0.1106649671 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
11 Hb_001790_110 0.1109724787 - - unknown [Populus trichocarpa]
12 Hb_000629_090 0.1118974527 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
13 Hb_039164_010 0.1121392692 - - -
14 Hb_041711_040 0.1123660018 - - hypothetical protein, partial [Pseudomonas fluorescens]
15 Hb_152483_010 0.1133985784 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
16 Hb_004208_040 0.1198571189 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
17 Hb_000710_100 0.1317156442 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
18 Hb_010623_010 0.1326981428 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
19 Hb_000311_130 0.1357553641 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
20 Hb_101462_010 0.1400239179 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002395_040 Hb_002395_040 Hb_000907_010 Hb_000907_010 Hb_002395_040--Hb_000907_010 Hb_020154_010 Hb_020154_010 Hb_002395_040--Hb_020154_010 Hb_025628_010 Hb_025628_010 Hb_002395_040--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_002395_040--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_002395_040--Hb_006663_080 Hb_000373_140 Hb_000373_140 Hb_002395_040--Hb_000373_140 Hb_000907_010--Hb_020154_010 Hb_001790_110 Hb_001790_110 Hb_000907_010--Hb_001790_110 Hb_000907_010--Hb_025628_010 Hb_000907_010--Hb_000540_180 Hb_004208_040 Hb_004208_040 Hb_000907_010--Hb_004208_040 Hb_020154_010--Hb_025628_010 Hb_020154_010--Hb_000540_180 Hb_020154_010--Hb_006663_080 Hb_003625_030 Hb_003625_030 Hb_020154_010--Hb_003625_030 Hb_025628_010--Hb_000540_180 Hb_025628_010--Hb_006663_080 Hb_025628_010--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_025628_010--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_025628_010--Hb_000629_090 Hb_000540_180--Hb_006663_080 Hb_000540_180--Hb_003625_030 Hb_000540_180--Hb_004683_030 Hb_000540_180--Hb_000629_090 Hb_006663_080--Hb_003625_030 Hb_006663_080--Hb_004683_030 Hb_006663_080--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_006663_080--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_006663_080--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_006663_080--Hb_152483_010 Hb_101462_010 Hb_101462_010 Hb_000373_140--Hb_101462_010 Hb_000373_140--Hb_004208_040 Hb_079902_010 Hb_079902_010 Hb_000373_140--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.03414 0.0366168 0.363185 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0559744 0 0 0 41.2664

CAGE analysis