Hb_002397_070

Information

Type -
Description -
Location Contig2397: 73367-75283
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15430g
description POPTRDRAFT_646889; hypothetical protein
nr
ID XP_012067833.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9C501
description Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
trembl
ID A0A067LA25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15762 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25098: 75220-75447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002397_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_001504_100 0.0994704373 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
3 Hb_003992_240 0.1057804454 - - -
4 Hb_007044_060 0.1098912399 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004931_090 0.1123437718 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
6 Hb_004586_170 0.1140544818 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
7 Hb_000574_160 0.1143493135 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
8 Hb_000988_080 0.115108669 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_010172_050 0.1168298779 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
10 Hb_138585_060 0.117518997 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
11 Hb_000167_140 0.118581259 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
12 Hb_002454_030 0.1186603032 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
13 Hb_002235_280 0.1194380117 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
14 Hb_000072_080 0.1196378272 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
15 Hb_000608_370 0.1210722989 - - acyl-carrier-protein [Triadica sebifera]
16 Hb_002235_350 0.1210808842 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_003266_130 0.1226432248 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_000479_010 0.1230172824 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
19 Hb_000788_100 0.1243536139 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
20 Hb_000193_290 0.1244763728 - - hypothetical protein JCGZ_11661 [Jatropha curcas]

Gene co-expression network

sample Hb_002397_070 Hb_002397_070 Hb_001504_100 Hb_001504_100 Hb_002397_070--Hb_001504_100 Hb_003992_240 Hb_003992_240 Hb_002397_070--Hb_003992_240 Hb_007044_060 Hb_007044_060 Hb_002397_070--Hb_007044_060 Hb_004931_090 Hb_004931_090 Hb_002397_070--Hb_004931_090 Hb_004586_170 Hb_004586_170 Hb_002397_070--Hb_004586_170 Hb_000574_160 Hb_000574_160 Hb_002397_070--Hb_000574_160 Hb_000167_140 Hb_000167_140 Hb_001504_100--Hb_000167_140 Hb_000676_180 Hb_000676_180 Hb_001504_100--Hb_000676_180 Hb_129204_030 Hb_129204_030 Hb_001504_100--Hb_129204_030 Hb_001245_100 Hb_001245_100 Hb_001504_100--Hb_001245_100 Hb_055488_010 Hb_055488_010 Hb_001504_100--Hb_055488_010 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040 Hb_001269_170 Hb_001269_170 Hb_007044_060--Hb_001269_170 Hb_034406_020 Hb_034406_020 Hb_007044_060--Hb_034406_020 Hb_002231_030 Hb_002231_030 Hb_007044_060--Hb_002231_030 Hb_000072_080 Hb_000072_080 Hb_007044_060--Hb_000072_080 Hb_001287_030 Hb_001287_030 Hb_007044_060--Hb_001287_030 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_004306_100 Hb_004306_100 Hb_004586_170--Hb_004306_100 Hb_000979_200 Hb_000979_200 Hb_004586_170--Hb_000979_200 Hb_000732_130 Hb_000732_130 Hb_004586_170--Hb_000732_130 Hb_028486_030 Hb_028486_030 Hb_004586_170--Hb_028486_030 Hb_000906_040 Hb_000906_040 Hb_000574_160--Hb_000906_040 Hb_002235_350 Hb_002235_350 Hb_000574_160--Hb_002235_350 Hb_002259_070 Hb_002259_070 Hb_000574_160--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_000574_160--Hb_019253_030 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_001780_040 Hb_001780_040 Hb_000574_160--Hb_001780_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39612 1.09835 0.811359 0.542718 1.13817 1.7187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57393 4.28813 2.92793 0.568086 1.19043

CAGE analysis