Hb_002398_030

Information

Type -
Description -
Location Contig2398: 69571-74286
Sequence    

Annotation

kegg
ID rcu:RCOM_0888830
description amino acid binding protein, putative
nr
ID XP_002521182.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LZ23
description ACT domain-containing protein ACR12 OS=Arabidopsis thaliana GN=ACR12 PE=2 SV=1
trembl
ID B9S5B3
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0888830 PE=4 SV=1
Gene Ontology
ID GO:0009535
description act domain-containing protein acr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25099: 56253-74350 , PASA_asmbl_25100: 56429-74348 , PASA_asmbl_25101: 73687-73962 , PASA_asmbl_25102: 56429-74346
cDNA
(Sanger)
(ID:Location)		 053_C20.ab1: 56248-73696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002398_030 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_008120_030 0.0452110531 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
3 Hb_000445_050 0.0540602056 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
4 Hb_003549_090 0.0607202687 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_058999_030 0.0608073037 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
6 Hb_000035_110 0.0647491226 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
7 Hb_001635_160 0.0681680191 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
8 Hb_003897_040 0.0682995192 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
9 Hb_002272_130 0.0684736808 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
10 Hb_000777_050 0.0686584236 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
11 Hb_000208_260 0.0693554084 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
12 Hb_009049_020 0.0697458215 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
13 Hb_002876_320 0.0704852725 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
14 Hb_028308_010 0.0722376806 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
15 Hb_001005_030 0.0728749938 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
16 Hb_000101_380 0.0733217158 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
17 Hb_007592_030 0.073626751 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_000933_010 0.0739222846 - - -
19 Hb_001377_310 0.0748644345 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
20 Hb_005460_050 0.0755313598 - - COR413-PM2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002398_030 Hb_002398_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_008120_030--Hb_001635_160 Hb_011310_210 Hb_011310_210 Hb_008120_030--Hb_011310_210 Hb_000777_050 Hb_000777_050 Hb_008120_030--Hb_000777_050 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_000445_050--Hb_058999_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_003549_090--Hb_011310_210 Hb_003549_090--Hb_058999_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_058999_030--Hb_007592_030 Hb_001377_310 Hb_001377_310 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_001635_160--Hb_005460_050 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001635_160--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.389 16.5512 26.5937 25.9185 24.0612 32.5306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8079 11.4294 14.9984 17.3999 15.1124

CAGE analysis