Hb_002400_010

Information

Type -
Description -
Location Contig2400: 6905-11089
Sequence    

Annotation

kegg
ID rcu:RCOM_0923970
description L-ascorbate peroxidase 1, cytosolic, putative (EC:1.11.1.11)
nr
ID XP_012076559.1
description PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
swissprot
ID Q8GY91
description Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1
trembl
ID A0A067KBJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07162 PE=3 SV=1
Gene Ontology
ID GO:0005829
description l-ascorbate peroxidase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25140: 6818-11095
cDNA
(Sanger)
(ID:Location)		 023_K07.ab1: 9295-11095 , 036_D09.ab1: 8344-11095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_010 0.0 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
2 Hb_004208_090 0.1046186283 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_000056_310 0.116607585 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
4 Hb_000934_260 0.1176432741 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_000749_200 0.1199520841 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
6 Hb_006252_030 0.1214502212 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
7 Hb_000322_040 0.1231198487 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_000009_020 0.1306090355 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
9 Hb_002498_170 0.1331221417 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_001975_050 0.1356079419 - - Tyrosine-specific transport protein, putative [Ricinus communis]
11 Hb_004117_150 0.1384462073 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
12 Hb_003683_030 0.1391568319 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_001999_260 0.144763904 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
14 Hb_000637_070 0.1481270102 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
15 Hb_001953_100 0.1494477319 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
16 Hb_003470_100 0.1494527096 - - protein binding protein, putative [Ricinus communis]
17 Hb_004855_070 0.1532392503 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
18 Hb_000035_210 0.1535681675 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
19 Hb_000603_270 0.1539070681 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
20 Hb_007894_190 0.1582350302 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_010 Hb_002400_010 Hb_004208_090 Hb_004208_090 Hb_002400_010--Hb_004208_090 Hb_000056_310 Hb_000056_310 Hb_002400_010--Hb_000056_310 Hb_000934_260 Hb_000934_260 Hb_002400_010--Hb_000934_260 Hb_000749_200 Hb_000749_200 Hb_002400_010--Hb_000749_200 Hb_006252_030 Hb_006252_030 Hb_002400_010--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_002400_010--Hb_000322_040 Hb_001999_260 Hb_001999_260 Hb_004208_090--Hb_001999_260 Hb_004208_090--Hb_000934_260 Hb_004117_150 Hb_004117_150 Hb_004208_090--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_148146_010 Hb_148146_010 Hb_000056_310--Hb_148146_010 Hb_000056_310--Hb_006252_030 Hb_005618_080 Hb_005618_080 Hb_000056_310--Hb_005618_080 Hb_000009_020 Hb_000009_020 Hb_000056_310--Hb_000009_020 Hb_001953_100 Hb_001953_100 Hb_000056_310--Hb_001953_100 Hb_000056_310--Hb_000749_200 Hb_000637_070 Hb_000637_070 Hb_000934_260--Hb_000637_070 Hb_000934_260--Hb_000322_040 Hb_000934_260--Hb_001999_260 Hb_050514_020 Hb_050514_020 Hb_000934_260--Hb_050514_020 Hb_006846_160 Hb_006846_160 Hb_000934_260--Hb_006846_160 Hb_003683_030 Hb_003683_030 Hb_000749_200--Hb_003683_030 Hb_000749_200--Hb_006252_030 Hb_000465_440 Hb_000465_440 Hb_000749_200--Hb_000465_440 Hb_000749_200--Hb_000934_260 Hb_006252_030--Hb_000322_040 Hb_000169_070 Hb_000169_070 Hb_006252_030--Hb_000169_070 Hb_006252_030--Hb_005618_080 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_000322_040--Hb_000056_310 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.8307 1.23623 10.3494 2.30009 1.28386 2.32062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.295483 0.398445 0.246644 0.785256 6.72155

CAGE analysis