Hb_002400_040

Information

Type -
Description -
Location Contig2400: 45067-47486
Sequence    

Annotation

kegg
ID rcu:RCOM_0923950
description hypothetical protein
nr
ID XP_012076557.1
description PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25146: 45248-47586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_040 0.0 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
2 Hb_005408_080 0.1044158751 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
3 Hb_000047_010 0.1074663162 - - PREDICTED: expansin-like A1 [Jatropha curcas]
4 Hb_000892_030 0.1102427731 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_094437_050 0.1127366458 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
6 Hb_182970_010 0.1149391463 - - calmodulin-binding protein 60-D [Populus trichocarpa]
7 Hb_004109_110 0.1201131227 - - dioxygenase family protein [Populus trichocarpa]
8 Hb_000418_060 0.1284850027 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
9 Hb_006153_020 0.1326540493 - - vacuolar invertase [Manihot esculenta]
10 Hb_003209_090 0.1352685729 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
11 Hb_062226_150 0.1442397065 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_003633_150 0.1444650951 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
13 Hb_006002_020 0.145872892 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
14 Hb_001247_160 0.1479784072 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_001019_020 0.1484814713 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021576_160 0.1495991018 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
17 Hb_097634_010 0.1553320004 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
18 Hb_000371_120 0.1594186448 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
19 Hb_000186_320 0.1599760344 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_001221_050 0.1607395819 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_040 Hb_002400_040 Hb_005408_080 Hb_005408_080 Hb_002400_040--Hb_005408_080 Hb_000047_010 Hb_000047_010 Hb_002400_040--Hb_000047_010 Hb_000892_030 Hb_000892_030 Hb_002400_040--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_002400_040--Hb_094437_050 Hb_182970_010 Hb_182970_010 Hb_002400_040--Hb_182970_010 Hb_004109_110 Hb_004109_110 Hb_002400_040--Hb_004109_110 Hb_005408_080--Hb_000892_030 Hb_005408_080--Hb_094437_050 Hb_000110_260 Hb_000110_260 Hb_005408_080--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_005408_080--Hb_005725_280 Hb_001329_080 Hb_001329_080 Hb_005408_080--Hb_001329_080 Hb_000047_010--Hb_000892_030 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_000047_010--Hb_006002_020 Hb_000047_010--Hb_004109_110 Hb_006153_020 Hb_006153_020 Hb_000047_010--Hb_006153_020 Hb_000892_030--Hb_094437_050 Hb_000892_030--Hb_005725_280 Hb_005694_150 Hb_005694_150 Hb_000892_030--Hb_005694_150 Hb_000365_340 Hb_000365_340 Hb_000892_030--Hb_000365_340 Hb_002498_250 Hb_002498_250 Hb_094437_050--Hb_002498_250 Hb_001019_020 Hb_001019_020 Hb_094437_050--Hb_001019_020 Hb_094437_050--Hb_005725_280 Hb_094437_050--Hb_000047_010 Hb_003633_150 Hb_003633_150 Hb_182970_010--Hb_003633_150 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_182970_010--Hb_005408_080 Hb_004109_110--Hb_006153_020 Hb_004109_110--Hb_006002_020 Hb_021576_160 Hb_021576_160 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_024650_010 Hb_024650_010 Hb_004109_110--Hb_024650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204772 47.3193 38.0195 49.136 0.482932 0.274408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01465 2.44619 2.6653 2.065 12.6212

CAGE analysis