Hb_002400_050

Information

Type -
Description -
Location Contig2400: 49163-51728
Sequence    

Annotation

kegg
ID rcu:RCOM_0923940
description hypothetical protein
nr
ID XP_012076555.1
description PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07159 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_050 0.0 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
2 Hb_000890_020 0.1266372035 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
3 Hb_000134_030 0.1352721225 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
4 Hb_000260_610 0.1394739694 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
5 Hb_007545_110 0.1426616595 - - catalytic, putative [Ricinus communis]
6 Hb_002518_200 0.1447046461 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_000181_270 0.1466070912 - - ATP binding protein, putative [Ricinus communis]
8 Hb_013834_010 0.1476325402 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
9 Hb_002540_070 0.1481033682 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
10 Hb_000288_090 0.1522863772 - - unnamed protein product [Vitis vinifera]
11 Hb_004920_050 0.1575975385 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
12 Hb_000732_030 0.1632327206 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000959_190 0.1637617063 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
14 Hb_000032_200 0.1656548032 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_002235_380 0.1661179975 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
16 Hb_013344_010 0.1671265987 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
17 Hb_008406_100 0.1754080874 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
18 Hb_006970_130 0.1777694766 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
19 Hb_002078_230 0.1781414231 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
20 Hb_000365_210 0.1781916813 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]

Gene co-expression network

sample Hb_002400_050 Hb_002400_050 Hb_000890_020 Hb_000890_020 Hb_002400_050--Hb_000890_020 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_002400_050--Hb_000260_610 Hb_007545_110 Hb_007545_110 Hb_002400_050--Hb_007545_110 Hb_002518_200 Hb_002518_200 Hb_002400_050--Hb_002518_200 Hb_000181_270 Hb_000181_270 Hb_002400_050--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_000890_020--Hb_004920_050 Hb_002540_070 Hb_002540_070 Hb_000890_020--Hb_002540_070 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390 Hb_000890_020--Hb_000181_270 Hb_008173_060 Hb_008173_060 Hb_000134_030--Hb_008173_060 Hb_124951_010 Hb_124951_010 Hb_000134_030--Hb_124951_010 Hb_000134_030--Hb_002518_200 Hb_000134_030--Hb_000260_610 Hb_000134_030--Hb_000890_020 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_000260_610--Hb_007545_110 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_000260_610--Hb_004920_050 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_002518_200--Hb_000181_270 Hb_002518_200--Hb_004920_050 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_011485_030 Hb_011485_030 Hb_000181_270--Hb_011485_030 Hb_000181_270--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132769 0.381211 1.87674 0.718587 0.0322516 0.202961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151836 0.0597205 0.0557017 0.238995 0.123967

CAGE analysis