Hb_002400_080

Information

Type -
Description -
Location Contig2400: 70944-72142
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_080 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_001497_040 0.1264389833 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
3 Hb_002276_030 0.1714673512 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
4 Hb_000500_360 0.1734767886 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
5 Hb_001244_050 0.1809890208 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
6 Hb_002845_020 0.1825229919 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
7 Hb_000049_170 0.1832215084 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000147_020 0.1866282171 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
9 Hb_002798_080 0.187212706 - - hypothetical protein VITISV_043745 [Vitis vinifera]
10 Hb_004724_180 0.1937035675 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
11 Hb_000856_130 0.2033126166 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_032260_110 0.2044419942 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000640_330 0.2044559983 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002675_230 0.2068137995 - - PREDICTED: glutathione S-transferase L3-like [Populus euphratica]
15 Hb_007205_020 0.2074224364 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_003494_180 0.2092920835 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
17 Hb_006827_030 0.2137182259 - - oligopeptide transporter, putative [Ricinus communis]
18 Hb_064106_010 0.2137223038 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
19 Hb_001285_020 0.2140574368 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_004324_320 0.2140899516 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_080 Hb_002400_080 Hb_001497_040 Hb_001497_040 Hb_002400_080--Hb_001497_040 Hb_002276_030 Hb_002276_030 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_032260_110 Hb_032260_110 Hb_001497_040--Hb_032260_110 Hb_002615_080 Hb_002615_080 Hb_001497_040--Hb_002615_080 Hb_002798_080 Hb_002798_080 Hb_001497_040--Hb_002798_080 Hb_001497_040--Hb_002276_030 Hb_006827_030 Hb_006827_030 Hb_001497_040--Hb_006827_030 Hb_008878_020 Hb_008878_020 Hb_002276_030--Hb_008878_020 Hb_002276_030--Hb_001244_050 Hb_006277_080 Hb_006277_080 Hb_002276_030--Hb_006277_080 Hb_000608_360 Hb_000608_360 Hb_002276_030--Hb_000608_360 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_001172_150 Hb_001172_150 Hb_002276_030--Hb_001172_150 Hb_000147_020 Hb_000147_020 Hb_000500_360--Hb_000147_020 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_009102_010 Hb_009102_010 Hb_000500_360--Hb_009102_010 Hb_000500_360--Hb_000049_170 Hb_000500_360--Hb_002845_020 Hb_001285_020 Hb_001285_020 Hb_000500_360--Hb_001285_020 Hb_001244_050--Hb_008878_020 Hb_000917_200 Hb_000917_200 Hb_001244_050--Hb_000917_200 Hb_016687_010 Hb_016687_010 Hb_001244_050--Hb_016687_010 Hb_002675_230 Hb_002675_230 Hb_001244_050--Hb_002675_230 Hb_000212_270 Hb_000212_270 Hb_001244_050--Hb_000212_270 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_001866_100 Hb_001866_100 Hb_002845_020--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_002845_020--Hb_007205_020 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_000049_170--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_000049_170--Hb_006588_020 Hb_000049_170--Hb_001866_100 Hb_171168_010 Hb_171168_010 Hb_000049_170--Hb_171168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0266809 0.0491967 0.122664 0.0219495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0973008 0.194832

CAGE analysis