Hb_002400_120

Information

Type -
Description -
Location Contig2400: 105680-106270
Sequence    

Annotation

kegg
ID bvg:104890716
description uncharacterized LOC104890716
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0003824
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_120 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_001611_030 0.0002992426 - - -
3 Hb_003894_130 0.0006264552 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_027556_030 0.0008349364 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
5 Hb_013405_120 0.0010279717 - - -
6 Hb_001621_080 0.001381396 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
7 Hb_051719_020 0.0018015265 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
8 Hb_001740_010 0.0018850126 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
9 Hb_140406_010 0.0026979315 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
10 Hb_012120_010 0.0029226058 - - -
11 Hb_001568_100 0.0030751832 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
12 Hb_001476_010 0.0034131289 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
13 Hb_006124_020 0.0043591571 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
14 Hb_060245_010 0.0047357976 - - -
15 Hb_002985_020 0.0048451146 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
16 Hb_000036_020 0.0048748187 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001814_090 0.00515628 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
18 Hb_007313_020 0.005486994 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_004332_060 0.0057212292 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000391_030 0.0062448902 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_002400_120 Hb_002400_120 Hb_001611_030 Hb_001611_030 Hb_002400_120--Hb_001611_030 Hb_003894_130 Hb_003894_130 Hb_002400_120--Hb_003894_130 Hb_027556_030 Hb_027556_030 Hb_002400_120--Hb_027556_030 Hb_013405_120 Hb_013405_120 Hb_002400_120--Hb_013405_120 Hb_001621_080 Hb_001621_080 Hb_002400_120--Hb_001621_080 Hb_051719_020 Hb_051719_020 Hb_002400_120--Hb_051719_020 Hb_001611_030--Hb_027556_030 Hb_001611_030--Hb_003894_130 Hb_001611_030--Hb_013405_120 Hb_001611_030--Hb_051719_020 Hb_001611_030--Hb_001621_080 Hb_003894_130--Hb_013405_120 Hb_003894_130--Hb_001621_080 Hb_001740_010 Hb_001740_010 Hb_003894_130--Hb_001740_010 Hb_003894_130--Hb_027556_030 Hb_027556_030--Hb_051719_020 Hb_027556_030--Hb_013405_120 Hb_140406_010 Hb_140406_010 Hb_027556_030--Hb_140406_010 Hb_013405_120--Hb_001621_080 Hb_013405_120--Hb_001740_010 Hb_001621_080--Hb_001740_010 Hb_001568_100 Hb_001568_100 Hb_001621_080--Hb_001568_100 Hb_051719_020--Hb_140406_010 Hb_012120_010 Hb_012120_010 Hb_051719_020--Hb_012120_010 Hb_001476_010 Hb_001476_010 Hb_051719_020--Hb_001476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0804004 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.071135 0

CAGE analysis