Hb_002400_160

Information

Type -
Description -
Location Contig2400: 133480-136821
Sequence    

Annotation

kegg
ID rcu:RCOM_0923730
description Ubiquitin-protein ligase BRE1A, putative
nr
ID XP_002515498.1
description Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RP29
description Ubiquitin-protein ligase BRE1A, putative OS=Ricinus communis GN=RCOM_0923730 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25159: 133561-136755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_160 0.0 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
2 Hb_002249_050 0.0915933725 - - Auxin response factor, putative [Ricinus communis]
3 Hb_002154_020 0.0958120468 - - protein with unknown function [Ricinus communis]
4 Hb_001488_040 0.0987912258 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
5 Hb_002897_050 0.1103735966 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
6 Hb_007313_070 0.1114162843 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
7 Hb_000126_070 0.1133900552 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
8 Hb_005183_140 0.1153237663 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_001427_150 0.1158667881 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
10 Hb_002918_320 0.1194497651 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
11 Hb_048755_020 0.1203921034 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
12 Hb_012812_010 0.1212221865 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
13 Hb_007849_050 0.1214738475 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
14 Hb_008686_020 0.1214761226 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
15 Hb_002387_040 0.1231339629 - - protein transporter, putative [Ricinus communis]
16 Hb_002248_120 0.1247048116 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_000699_210 0.124747811 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
18 Hb_005765_040 0.1248306453 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_011249_060 0.1264609095 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
20 Hb_002482_030 0.1266287134 transcription factor TF Family: PLATZ unknown [Medicago truncatula]

Gene co-expression network

sample Hb_002400_160 Hb_002400_160 Hb_002249_050 Hb_002249_050 Hb_002400_160--Hb_002249_050 Hb_002154_020 Hb_002154_020 Hb_002400_160--Hb_002154_020 Hb_001488_040 Hb_001488_040 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070 Hb_159295_010 Hb_159295_010 Hb_002249_050--Hb_159295_010 Hb_005765_040 Hb_005765_040 Hb_002249_050--Hb_005765_040 Hb_002249_050--Hb_002154_020 Hb_000613_220 Hb_000613_220 Hb_002249_050--Hb_000613_220 Hb_002249_050--Hb_001488_040 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_009486_160 Hb_009486_160 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001488_040--Hb_011249_060 Hb_001488_040--Hb_005765_040 Hb_000866_210 Hb_000866_210 Hb_002897_050--Hb_000866_210 Hb_011631_010 Hb_011631_010 Hb_002897_050--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_002897_050--Hb_000638_280 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_000084_240 Hb_000084_240 Hb_002897_050--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002897_050--Hb_000045_260 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_004994_300 Hb_004994_300 Hb_007313_070--Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_172421_010 Hb_172421_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_002918_320 Hb_002918_320 Hb_000126_070--Hb_002918_320 Hb_000126_070--Hb_005765_040 Hb_005183_140 Hb_005183_140 Hb_000126_070--Hb_005183_140 Hb_000126_070--Hb_002249_050 Hb_000300_250 Hb_000300_250 Hb_000126_070--Hb_000300_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3912 149.964 57.0603 28.6759 16.6177 21.1166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7431 15.8641 20.9845 38.8938 60.2163

CAGE analysis