Hb_002400_200

Information

Type -
Description -
Location Contig2400: 174219-174578
Sequence    

Annotation

kegg
ID rcu:RCOM_0923580
description 14 kDa proline-rich protein DC2.15 precursor, putative
nr
ID XP_002515493.1
description 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
swissprot
ID P14009
description 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1
trembl
ID B9RP24
description 14 kDa proline-rich protein DC2.15, putative OS=Ricinus communis GN=RCOM_0923580 PE=4 SV=1
Gene Ontology
ID GO:0003899
description 14 kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 001_K04.ab1: 173829-174618 , 002_C04.ab1: 173853-175426 , 004_A15.ab1: 173834-175426 , 005_H15.ab1: 173896-175426 , 010_K16.ab1: 173896-175426 , 017_I14.ab1: 173945-174614 , 019_K12.ab1: 173926-175426 , 019_N19.ab1: 173861-175426 , 020_C04.ab1: 173939-175426 , 020_O08.ab1: 173896-174614 , 021_J18.ab1: 173939-175426 , 024_M22.ab1: 173919-174614 , 034_A22.ab1: 173879-175426 , 036_G15.ab1: 174188-175426 , 036_G21.ab1: 174032-175426 , 036_N11.ab1: 173874-175426 , 042_A21.ab1: 173907-175426 , 043_L07.ab1: 173896-174614 , 045_I06.ab1: 173902-175426 , 046_B07.ab1: 173950-174613 , 048_B11.ab1: 173861-175426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_200 0.0 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
2 Hb_001936_100 0.0261007897 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001053_070 0.0391628259 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
4 Hb_002374_480 0.0406521259 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_002890_170 0.04170346 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
6 Hb_000373_210 0.043526929 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
7 Hb_001049_130 0.0443540203 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
8 Hb_082402_020 0.0460068162 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
9 Hb_004129_170 0.0484163384 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
10 Hb_000703_340 0.0488301123 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_013405_110 0.0506294734 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_003747_090 0.0522300604 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_005375_090 0.0525348568 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
14 Hb_153106_010 0.0543477203 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_031862_220 0.0545697454 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
16 Hb_180007_010 0.056211339 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_001862_040 0.0563694593 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
18 Hb_000251_160 0.0644550571 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_002785_040 0.0658042332 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
20 Hb_004452_070 0.066888676 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002400_200 Hb_002400_200 Hb_001936_100 Hb_001936_100 Hb_002400_200--Hb_001936_100 Hb_001053_070 Hb_001053_070 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_002890_170 Hb_002890_170 Hb_002400_200--Hb_002890_170 Hb_000373_210 Hb_000373_210 Hb_002400_200--Hb_000373_210 Hb_001049_130 Hb_001049_130 Hb_002400_200--Hb_001049_130 Hb_001936_100--Hb_001053_070 Hb_001936_100--Hb_001049_130 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340 Hb_001936_100--Hb_000373_210 Hb_031862_220 Hb_031862_220 Hb_001936_100--Hb_031862_220 Hb_001053_070--Hb_001049_130 Hb_001053_070--Hb_031862_220 Hb_001053_070--Hb_000373_210 Hb_000987_030 Hb_000987_030 Hb_001053_070--Hb_000987_030 Hb_180007_010 Hb_180007_010 Hb_002374_480--Hb_180007_010 Hb_004129_170 Hb_004129_170 Hb_002374_480--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002374_480--Hb_153106_010 Hb_000251_160 Hb_000251_160 Hb_002374_480--Hb_000251_160 Hb_002374_480--Hb_000373_210 Hb_082402_020 Hb_082402_020 Hb_002890_170--Hb_082402_020 Hb_003747_090 Hb_003747_090 Hb_002890_170--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002890_170--Hb_005375_090 Hb_002890_170--Hb_004129_170 Hb_002890_170--Hb_153106_010 Hb_000373_210--Hb_031862_220 Hb_000373_210--Hb_001049_130 Hb_000373_210--Hb_180007_010 Hb_001049_130--Hb_031862_220 Hb_001049_130--Hb_000987_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.184367 850.013 345.781 0 0.492494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1832.9

CAGE analysis