Hb_002400_220

Information

Type -
Description -
Location Contig2400: 185225-187689
Sequence    

Annotation

kegg
ID rcu:RCOM_0923570
description Vesicle-associated membrane protein, putative
nr
ID XP_002515492.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9LFP1
description Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1
trembl
ID B9RP23
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_0923570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 711

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25169: 185125-187569 , PASA_asmbl_25170: 185221-187558
cDNA
(Sanger)
(ID:Location)		 007_M14.ab1: 185125-187073 , 011_I22.ab1: 185125-187099 , 048_L19.ab1: 185125-187016

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_220 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_159558_030 0.0630037069 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
3 Hb_000500_130 0.0699362067 - - small GTPase [Hevea brasiliensis]
4 Hb_007441_340 0.0733289201 - - protein with unknown function [Ricinus communis]
5 Hb_033491_010 0.0757768107 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
6 Hb_001269_150 0.079333294 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
7 Hb_000359_170 0.0800330507 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
8 Hb_027892_060 0.0830163524 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
9 Hb_000272_100 0.0831348975 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
10 Hb_118977_020 0.0838579022 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
11 Hb_000172_120 0.0870029871 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
12 Hb_000179_170 0.0871851559 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
13 Hb_000808_040 0.087777873 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
14 Hb_000386_040 0.0881497952 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_001124_210 0.090909045 - - conserved hypothetical protein [Ricinus communis]
16 Hb_076787_010 0.0926769029 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
17 Hb_002942_020 0.093560157 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_022137_060 0.0938195332 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
19 Hb_005489_130 0.0941447529 - - calmodulin, putative [Ricinus communis]
20 Hb_006447_010 0.0946776394 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_220 Hb_002400_220 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_159558_030--Hb_000500_130 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_000172_120 Hb_000172_120 Hb_007441_340--Hb_000172_120 Hb_004096_170 Hb_004096_170 Hb_007441_340--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_007441_340--Hb_003453_020 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_001269_150--Hb_000172_120 Hb_001269_150--Hb_000732_260 Hb_004813_010 Hb_004813_010 Hb_001269_150--Hb_004813_010 Hb_008725_250 Hb_008725_250 Hb_000359_170--Hb_008725_250 Hb_022137_060 Hb_022137_060 Hb_000359_170--Hb_022137_060 Hb_005754_020 Hb_005754_020 Hb_000359_170--Hb_005754_020 Hb_000359_170--Hb_033491_010 Hb_005306_110 Hb_005306_110 Hb_000359_170--Hb_005306_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.745 62.111 50.556 88.1314 239.012 282.04
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
290.863 172.985 130.764 46.8741 25.9179

CAGE analysis