Hb_002400_230

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2400: 188831-192374
Sequence    

Annotation

kegg
ID tcc:TCM_036972
description FAR1-related sequence 6 isoform 1
nr
ID XP_012076522.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
swissprot
ID Q9SSQ4
description Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1
trembl
ID A0A067KEY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07144 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_230 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
2 Hb_000732_070 0.096554889 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_001454_170 0.1040617477 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
4 Hb_000334_130 0.1146385152 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
5 Hb_001454_220 0.1216885942 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
6 Hb_152540_010 0.1244475005 - - -
7 Hb_004032_230 0.1253626934 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
8 Hb_002687_090 0.1254258843 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
9 Hb_005333_140 0.1264718492 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
10 Hb_000264_180 0.1275889602 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
11 Hb_006618_040 0.1285931761 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
12 Hb_000086_050 0.1287964195 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
13 Hb_000102_050 0.1288210642 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_009486_080 0.1297796089 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
15 Hb_005181_040 0.131047646 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
16 Hb_000997_150 0.1313048808 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000086_150 0.1321791208 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
18 Hb_001301_130 0.1323572397 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
19 Hb_000334_170 0.1324273148 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
20 Hb_102438_030 0.1326745819 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_230 Hb_002400_230 Hb_000732_070 Hb_000732_070 Hb_002400_230--Hb_000732_070 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_000334_130 Hb_000334_130 Hb_002400_230--Hb_000334_130 Hb_001454_220 Hb_001454_220 Hb_002400_230--Hb_001454_220 Hb_152540_010 Hb_152540_010 Hb_002400_230--Hb_152540_010 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_020805_100 Hb_020805_100 Hb_000732_070--Hb_020805_100 Hb_000086_050 Hb_000086_050 Hb_000732_070--Hb_000086_050 Hb_003895_020 Hb_003895_020 Hb_000732_070--Hb_003895_020 Hb_000732_070--Hb_000334_130 Hb_006573_160 Hb_006573_160 Hb_000732_070--Hb_006573_160 Hb_000949_020 Hb_000949_020 Hb_001454_170--Hb_000949_020 Hb_001673_050 Hb_001673_050 Hb_001454_170--Hb_001673_050 Hb_001454_170--Hb_000334_130 Hb_134362_010 Hb_134362_010 Hb_001454_170--Hb_134362_010 Hb_009486_080 Hb_009486_080 Hb_001454_170--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_001454_170--Hb_000573_060 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220 Hb_152540_010--Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_152540_010--Hb_009449_090 Hb_006618_040 Hb_006618_040 Hb_152540_010--Hb_006618_040 Hb_152540_010--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_152540_010--Hb_002687_090 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_001231_090 Hb_001231_090 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84378 11.8582 10.3207 5.45432 11.6891 3.21273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67878 2.39032 2.811 4.12518 7.63386

CAGE analysis