Hb_002400_240

Information

Type -
Description -
Location Contig2400: 194444-204049
Sequence    

Annotation

kegg
ID vvi:100259525
description uncharacterized LOC100259525
nr
ID XP_012076521.1
description PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
swissprot
ID Q84WU2
description Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1
trembl
ID A0A067KBP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07143 PE=4 SV=1
Gene Ontology
ID GO:0003824
description traf-like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25173: 199382-203944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_240 0.0 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
2 Hb_001913_060 0.0659088193 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
3 Hb_002301_080 0.0688075673 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
4 Hb_116929_010 0.0693043941 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
5 Hb_030627_060 0.0745247451 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
6 Hb_117552_010 0.0750503219 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_005701_070 0.0762471382 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
8 Hb_000446_120 0.0818086309 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
9 Hb_000997_030 0.0822425388 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
10 Hb_004718_010 0.0823188279 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
11 Hb_003044_020 0.0826778317 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
12 Hb_133047_010 0.0838087569 - - xanthine dehydrogenase, putative [Ricinus communis]
13 Hb_000922_370 0.0839690814 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
14 Hb_111985_080 0.0858147239 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
15 Hb_141547_010 0.0870654269 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
16 Hb_000406_020 0.0895119397 - - -
17 Hb_157966_010 0.0895423824 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
18 Hb_000780_220 0.0895956858 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
19 Hb_007576_120 0.090415677 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
20 Hb_148909_030 0.0909077338 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_240 Hb_002400_240 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_002301_080 Hb_002301_080 Hb_002400_240--Hb_002301_080 Hb_116929_010 Hb_116929_010 Hb_002400_240--Hb_116929_010 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_117552_010 Hb_117552_010 Hb_002400_240--Hb_117552_010 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_002784_110 Hb_002784_110 Hb_001913_060--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_002301_080--Hb_117552_010 Hb_133047_010 Hb_133047_010 Hb_002301_080--Hb_133047_010 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_116929_010--Hb_003044_020 Hb_000183_020 Hb_000183_020 Hb_116929_010--Hb_000183_020 Hb_003623_030 Hb_003623_030 Hb_116929_010--Hb_003623_030 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_030627_060--Hb_002329_040 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_005701_070--Hb_000446_120 Hb_005701_070--Hb_030627_060 Hb_005701_070--Hb_002784_110 Hb_000406_020 Hb_000406_020 Hb_005701_070--Hb_000406_020 Hb_025194_040 Hb_025194_040 Hb_005701_070--Hb_025194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9734 26.0113 6.48267 11.6482 26.7096 30.736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.29272 4.95897 17.3376 19.8113 16.15

CAGE analysis