Hb_002400_270

Information

Type -
Description -
Location Contig2400: 215401-221121
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01960g
description POPTRDRAFT_779065; sucrose-phosphate synthase family protein
nr
ID XP_012076514.1
description PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
swissprot
ID O22060
description Probable sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1
trembl
ID A0A067KP34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07140 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable sucrose-phosphate synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25175: 215463-221170
cDNA
(Sanger)
(ID:Location)		 009_M06.ab1: 219204-221060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_270 0.0 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
2 Hb_000327_240 0.0828496026 - - PREDICTED: interaptin-like [Jatropha curcas]
3 Hb_011316_110 0.0847598412 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
4 Hb_000742_250 0.0929843927 - - Tubulin beta-6 chain [Gossypium arboreum]
5 Hb_002818_040 0.0930116801 - - tRNA synthetase-related family protein [Populus trichocarpa]
6 Hb_000369_060 0.0939569306 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_001416_040 0.0949344 - - acid phosphatase, putative [Ricinus communis]
8 Hb_017168_010 0.0986427098 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001584_110 0.10168288 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
10 Hb_001846_060 0.1037005688 - - hypothetical protein RCOM_0992860 [Ricinus communis]
11 Hb_001040_170 0.1044185373 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_006816_290 0.1048016047 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
13 Hb_006091_030 0.1059869003 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
14 Hb_000491_080 0.1083136308 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
15 Hb_004993_010 0.1094778643 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
16 Hb_007786_010 0.1102946278 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
17 Hb_002874_070 0.1112122428 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
18 Hb_004096_020 0.1114287969 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
19 Hb_000161_030 0.1127210618 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
20 Hb_000107_100 0.1128389848 - - hypothetical protein JCGZ_16208 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_270 Hb_002400_270 Hb_000327_240 Hb_000327_240 Hb_002400_270--Hb_000327_240 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_001416_040 Hb_001416_040 Hb_002400_270--Hb_001416_040 Hb_000327_240--Hb_001416_040 Hb_001040_170 Hb_001040_170 Hb_000327_240--Hb_001040_170 Hb_000284_200 Hb_000284_200 Hb_000327_240--Hb_000284_200 Hb_000984_180 Hb_000984_180 Hb_000327_240--Hb_000984_180 Hb_006816_290 Hb_006816_290 Hb_000327_240--Hb_006816_290 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110 Hb_001846_060 Hb_001846_060 Hb_000742_250--Hb_001846_060 Hb_006649_080 Hb_006649_080 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_011639_050 Hb_011639_050 Hb_000369_060--Hb_011639_050 Hb_004440_100 Hb_004440_100 Hb_000369_060--Hb_004440_100 Hb_002874_070 Hb_002874_070 Hb_000369_060--Hb_002874_070 Hb_000369_060--Hb_001846_060 Hb_001416_040--Hb_006816_290 Hb_001416_040--Hb_000984_180 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3408 10.9854 5.41796 4.72333 51.1237 41.7525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1764 11.2038 29.9746 6.80467 12.8823

CAGE analysis