Hb_002400_310

Information

Type -
Description -
Location Contig2400: 237176-238369
Sequence    

Annotation

kegg
ID rcu:RCOM_0923280
description hypothetical protein
nr
ID KDP33567.1
description hypothetical protein JCGZ_07138 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_310 0.0 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
2 Hb_007101_170 0.0537868932 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
3 Hb_093084_060 0.070487841 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
4 Hb_000244_220 0.0807434251 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000318_510 0.0833999713 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
6 Hb_006586_050 0.0860087064 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
7 Hb_001143_160 0.0861117276 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
8 Hb_000676_110 0.0861429904 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
9 Hb_000179_130 0.0868910678 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
10 Hb_001728_100 0.0902532998 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
11 Hb_005731_130 0.0908682379 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
12 Hb_012634_010 0.0910502653 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
13 Hb_000030_040 0.0913899902 - - yth domain-containing protein, putative [Ricinus communis]
14 Hb_000227_240 0.0939174288 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
15 Hb_001790_020 0.09442326 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
16 Hb_000207_390 0.0960788125 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
17 Hb_123352_020 0.096798941 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
18 Hb_000123_210 0.09790506 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
19 Hb_000487_290 0.0984848321 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
20 Hb_000046_010 0.099479822 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_310 Hb_002400_310 Hb_007101_170 Hb_007101_170 Hb_002400_310--Hb_007101_170 Hb_093084_060 Hb_093084_060 Hb_002400_310--Hb_093084_060 Hb_000244_220 Hb_000244_220 Hb_002400_310--Hb_000244_220 Hb_000318_510 Hb_000318_510 Hb_002400_310--Hb_000318_510 Hb_006586_050 Hb_006586_050 Hb_002400_310--Hb_006586_050 Hb_001143_160 Hb_001143_160 Hb_002400_310--Hb_001143_160 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_000206_250 Hb_000206_250 Hb_007101_170--Hb_000206_250 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_181235_010 Hb_181235_010 Hb_093084_060--Hb_181235_010 Hb_000373_150 Hb_000373_150 Hb_093084_060--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_093084_060--Hb_000125_170 Hb_000487_290 Hb_000487_290 Hb_093084_060--Hb_000487_290 Hb_004837_040 Hb_004837_040 Hb_093084_060--Hb_004837_040 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_001700_040 Hb_001700_040 Hb_000318_510--Hb_001700_040 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000347_180 Hb_000347_180 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_000059_210 Hb_000059_210 Hb_006586_050--Hb_000059_210 Hb_000521_260 Hb_000521_260 Hb_006586_050--Hb_000521_260 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.54802 9.02549 2.25795 5.65395 11.7074 9.98219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91812 6.35685 9.85201 8.79777 2.25845

CAGE analysis