Hb_002400_350

Information

Type -
Description -
Location Contig2400: 258934-260769
Sequence    

Annotation

kegg
ID cit:102612829
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006469117.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061G9I5
description Non-LTR retroelement reverse transcriptase OS=Theobroma cacao GN=TCM_027189 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25186: 260527-260748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_350 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_000200_280 0.1297100336 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
3 Hb_000976_040 0.131589596 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
4 Hb_000227_060 0.1483241564 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
5 Hb_156850_070 0.150791675 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001416_020 0.1545887647 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
7 Hb_000028_420 0.155183051 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
8 Hb_011512_090 0.1561106798 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
9 Hb_000853_120 0.1588571393 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
10 Hb_000640_130 0.1611536485 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_170487_020 0.1623516055 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
12 Hb_000530_010 0.1629753235 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
13 Hb_002110_030 0.1636630414 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
14 Hb_002400_400 0.1666215423 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
15 Hb_001514_130 0.1670121232 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
16 Hb_001541_040 0.1694208738 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001575_010 0.1707701183 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_101733_030 0.1720854603 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
19 Hb_001123_050 0.1733872133 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000213_120 0.1740997263 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002400_350 Hb_002400_350 Hb_000200_280 Hb_000200_280 Hb_002400_350--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_350--Hb_000976_040 Hb_000227_060 Hb_000227_060 Hb_002400_350--Hb_000227_060 Hb_156850_070 Hb_156850_070 Hb_002400_350--Hb_156850_070 Hb_001416_020 Hb_001416_020 Hb_002400_350--Hb_001416_020 Hb_000028_420 Hb_000028_420 Hb_002400_350--Hb_000028_420 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000976_040--Hb_011512_090 Hb_000976_040--Hb_156850_070 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_000622_250 Hb_000622_250 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_156850_070--Hb_005143_030 Hb_005214_090 Hb_005214_090 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_001416_020--Hb_000640_130 Hb_000521_170 Hb_000521_170 Hb_001416_020--Hb_000521_170 Hb_000283_150 Hb_000283_150 Hb_001416_020--Hb_000283_150 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_001416_020--Hb_005143_030 Hb_001416_020--Hb_011716_090 Hb_001541_040 Hb_001541_040 Hb_000028_420--Hb_001541_040 Hb_101733_030 Hb_101733_030 Hb_000028_420--Hb_101733_030 Hb_000078_050 Hb_000078_050 Hb_000028_420--Hb_000078_050 Hb_000010_250 Hb_000010_250 Hb_000028_420--Hb_000010_250 Hb_061411_010 Hb_061411_010 Hb_000028_420--Hb_061411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66195 3.45425 0.248948 1.21215 2.71785 1.04062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.154 2.00601 0.695992 3.12367 0.676229

CAGE analysis