Hb_002400_360

Information

Type -
Description -
Location Contig2400: 261355-264443
Sequence    

Annotation

kegg
ID rcu:RCOM_0923130
description heparanase, putative
nr
ID XP_002515478.1
description heparanase, putative [Ricinus communis]
swissprot
ID Q9FZP1
description Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2
trembl
ID B9RP09
description Heparanase, putative OS=Ricinus communis GN=RCOM_0923130 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25187: 263035-263274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_360 0.0 - - heparanase, putative [Ricinus communis]
2 Hb_000526_030 0.175333898 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
3 Hb_005539_020 0.1775330195 - - -
4 Hb_000169_170 0.1848717835 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
5 Hb_000023_350 0.1892198152 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
6 Hb_127599_010 0.2018581276 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
7 Hb_130389_010 0.2030988045 - - PREDICTED: la protein 1 [Jatropha curcas]
8 Hb_000051_050 0.2066894337 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
9 Hb_005400_040 0.207194919 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
10 Hb_001235_170 0.2080230435 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
11 Hb_010407_170 0.2101981998 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
12 Hb_014068_050 0.2114201274 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
13 Hb_006949_020 0.2132314436 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
14 Hb_000976_290 0.2193825091 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
15 Hb_000008_090 0.2215451666 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
16 Hb_000009_330 0.2218169286 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
17 Hb_000997_110 0.2231125355 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
18 Hb_004319_070 0.2251382791 - - hypothetical protein RCOM_0852460 [Ricinus communis]
19 Hb_029695_020 0.2269094223 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
20 Hb_004218_090 0.2278064591 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002400_360 Hb_002400_360 Hb_000526_030 Hb_000526_030 Hb_002400_360--Hb_000526_030 Hb_005539_020 Hb_005539_020 Hb_002400_360--Hb_005539_020 Hb_000169_170 Hb_000169_170 Hb_002400_360--Hb_000169_170 Hb_000023_350 Hb_000023_350 Hb_002400_360--Hb_000023_350 Hb_127599_010 Hb_127599_010 Hb_002400_360--Hb_127599_010 Hb_130389_010 Hb_130389_010 Hb_002400_360--Hb_130389_010 Hb_004319_070 Hb_004319_070 Hb_000526_030--Hb_004319_070 Hb_000526_030--Hb_130389_010 Hb_000526_030--Hb_005539_020 Hb_000526_030--Hb_000023_350 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_005539_020--Hb_004319_070 Hb_007054_040 Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_000169_170--Hb_127599_010 Hb_000862_040 Hb_000862_040 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_000023_350--Hb_004319_070 Hb_009486_160 Hb_009486_160 Hb_000023_350--Hb_009486_160 Hb_029695_020 Hb_029695_020 Hb_000023_350--Hb_029695_020 Hb_003711_010 Hb_003711_010 Hb_000023_350--Hb_003711_010 Hb_000023_350--Hb_000169_170 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_007982_050 Hb_007982_050 Hb_130389_010--Hb_007982_050 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_130389_010--Hb_127599_010 Hb_130389_010--Hb_004319_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810909 0.388977 0.182159 0.10108 0.187726 0.0422537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137192 0.0863509 0.0407237 0.232322 0

CAGE analysis