Hb_002400_410

Information

Type -
Description -
Location Contig2400: 291170-299407
Sequence    

Annotation

kegg
ID rcu:RCOM_0922790
description WD-repeat protein, putative
nr
ID XP_012076495.1
description PREDICTED: topless-related protein 1-like [Jatropha curcas]
swissprot
ID Q27GK7
description Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
trembl
ID B9RP05
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0922790 PE=4 SV=1
Gene Ontology
ID GO:0006342
description protein topless-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25196: 291430-295282 , PASA_asmbl_25197: 293593-293972 , PASA_asmbl_25198: 295342-297645 , PASA_asmbl_25199: 297842-299369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_410 0.0 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
2 Hb_003294_070 0.0709947387 - - hypothetical protein RCOM_1714550 [Ricinus communis]
3 Hb_007416_120 0.0761215351 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
4 Hb_002471_290 0.0775186582 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
5 Hb_119530_010 0.0776953782 - - -
6 Hb_009079_030 0.0781150763 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
7 Hb_000181_400 0.0828737405 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
8 Hb_002391_210 0.0850454467 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
9 Hb_011674_020 0.0856832551 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
10 Hb_002000_080 0.085799986 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
11 Hb_001268_410 0.0889990422 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
12 Hb_001571_050 0.0899082551 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
13 Hb_004324_130 0.0903263995 - - polypyrimidine tract binding protein, putative [Ricinus communis]
14 Hb_002456_010 0.0927649877 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
15 Hb_000556_120 0.0935521622 - - Spastin, putative [Ricinus communis]
16 Hb_073973_100 0.0942060592 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
17 Hb_003253_050 0.0951076555 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
18 Hb_000614_240 0.0952009462 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
19 Hb_001999_310 0.0955839579 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
20 Hb_001671_100 0.095672107 - - glycine-rich RNA-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002400_410 Hb_002400_410 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_001671_100 Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_001876_050 Hb_001876_050 Hb_007416_120--Hb_001876_050 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_005147_030 Hb_005147_030 Hb_002471_290--Hb_005147_030 Hb_002471_290--Hb_009079_030 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_003647_130 Hb_003647_130 Hb_002471_290--Hb_003647_130 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_119530_010--Hb_007416_120 Hb_007747_080 Hb_007747_080 Hb_119530_010--Hb_007747_080 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_001473_180 Hb_001473_180 Hb_009079_030--Hb_001473_180 Hb_000181_400--Hb_004324_130 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_000181_400--Hb_000111_290 Hb_000181_400--Hb_001876_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.22221 11.5379 5.54666 12.009 8.3734 11.3293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4033 11.5037 11.3144 24.4507 11.389

CAGE analysis