Hb_002400_470

Information

Type -
Description -
Location Contig2400: 326914-334490
Sequence    

Annotation

kegg
ID rcu:RCOM_0922750
description calcium ion binding protein, putative
nr
ID XP_012076491.1
description PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID B1H2N3
description Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis GN=micu1 PE=2 SV=2
trembl
ID A0A067KEW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07129 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium uptake protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25204: 326926-331066 , PASA_asmbl_25205: 326926-331066
cDNA
(Sanger)
(ID:Location)		 010_C02.ab1: 330117-331066 , 020_A02.ab1: 330110-331066 , 027_L14.ab1: 330112-331066 , 039_C13.ab1: 330222-331062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_470 0.0 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_008864_110 0.0532054202 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
3 Hb_001047_030 0.0631995691 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
4 Hb_057878_010 0.0650400699 - - hypothetical protein VITISV_036304 [Vitis vinifera]
5 Hb_000236_380 0.0715374979 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
6 Hb_000123_090 0.0752789366 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
7 Hb_005532_050 0.0761016927 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_003464_050 0.077562518 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
9 Hb_002078_020 0.0781918105 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
10 Hb_000322_100 0.0790184227 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
11 Hb_000538_100 0.0824260165 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001680_010 0.0830925074 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
13 Hb_002255_050 0.0853698159 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_000025_140 0.0853795043 - - las1-like family protein [Populus trichocarpa]
15 Hb_007904_200 0.0871143263 - - protein binding protein, putative [Ricinus communis]
16 Hb_000592_080 0.0871870872 - - PREDICTED: thymidylate kinase [Jatropha curcas]
17 Hb_000645_120 0.0879088384 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
18 Hb_003605_130 0.0880047854 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
19 Hb_000152_380 0.0889040395 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
20 Hb_000933_020 0.0892073261 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002400_470 Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_002400_470--Hb_008864_110 Hb_001047_030 Hb_001047_030 Hb_002400_470--Hb_001047_030 Hb_057878_010 Hb_057878_010 Hb_002400_470--Hb_057878_010 Hb_000236_380 Hb_000236_380 Hb_002400_470--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_002400_470--Hb_000123_090 Hb_005532_050 Hb_005532_050 Hb_002400_470--Hb_005532_050 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_008864_110--Hb_000123_090 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000442_150 Hb_000442_150 Hb_057878_010--Hb_000442_150 Hb_057878_010--Hb_000236_380 Hb_002671_140 Hb_002671_140 Hb_057878_010--Hb_002671_140 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_001348_050 Hb_001348_050 Hb_000236_380--Hb_001348_050 Hb_007592_030 Hb_007592_030 Hb_000236_380--Hb_007592_030 Hb_000933_020 Hb_000933_020 Hb_000123_090--Hb_000933_020 Hb_000123_090--Hb_003605_130 Hb_001195_560 Hb_001195_560 Hb_000123_090--Hb_001195_560 Hb_000123_090--Hb_001047_030 Hb_003464_050 Hb_003464_050 Hb_005532_050--Hb_003464_050 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_008803_090 Hb_008803_090 Hb_005532_050--Hb_008803_090 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3295 13.5069 10.0191 14.6408 24.6403 21.3297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8597 10.8519 16.84 7.71794 6.62687

CAGE analysis