Hb_002401_020

Information

Type -
Description -
Location Contig2401: 35300-41537
Sequence    

Annotation

kegg
ID vvi:100243183
description protein argonaute 16
nr
ID XP_012080655.1
description PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
swissprot
ID Q6YSJ5
description Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2
trembl
ID A0A067K3M5
description Protein argonaute OS=Jatropha curcas GN=JCGZ_13759 PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002401_020 0.0 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
2 Hb_069338_010 0.2389599691 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001124_200 0.2390128954 - - hypothetical protein B456_011G186000 [Gossypium raimondii]
4 Hb_011794_100 0.24502227 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
5 Hb_000005_140 0.2507853617 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
6 Hb_053272_010 0.253687299 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
7 Hb_009662_070 0.2755023931 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
8 Hb_000099_140 0.2851795412 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
9 Hb_002968_050 0.2884447988 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_003540_100 0.2908528282 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_000925_060 0.2918150447 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
12 Hb_004024_020 0.3045418249 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000340_120 0.3060271042 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
14 Hb_001439_020 0.3069822664 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
15 Hb_001832_170 0.3148890949 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
16 Hb_000510_280 0.3166409245 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
17 Hb_002025_040 0.3191789999 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
18 Hb_000749_280 0.3196490026 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
19 Hb_004662_020 0.3254636946 - - 40S ribosomal protein S9, putative [Ricinus communis]
20 Hb_019613_010 0.3257060738 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002401_020 Hb_002401_020 Hb_069338_010 Hb_069338_010 Hb_002401_020--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_002401_020--Hb_001124_200 Hb_011794_100 Hb_011794_100 Hb_002401_020--Hb_011794_100 Hb_000005_140 Hb_000005_140 Hb_002401_020--Hb_000005_140 Hb_053272_010 Hb_053272_010 Hb_002401_020--Hb_053272_010 Hb_009662_070 Hb_009662_070 Hb_002401_020--Hb_009662_070 Hb_069338_010--Hb_053272_010 Hb_069338_010--Hb_000005_140 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_000099_140 Hb_000099_140 Hb_069338_010--Hb_000099_140 Hb_002968_050 Hb_002968_050 Hb_069338_010--Hb_002968_050 Hb_004662_020 Hb_004662_020 Hb_001124_200--Hb_004662_020 Hb_010721_040 Hb_010721_040 Hb_001124_200--Hb_010721_040 Hb_001478_030 Hb_001478_030 Hb_001124_200--Hb_001478_030 Hb_000879_220 Hb_000879_220 Hb_001124_200--Hb_000879_220 Hb_000749_280 Hb_000749_280 Hb_001124_200--Hb_000749_280 Hb_001439_020 Hb_001439_020 Hb_011794_100--Hb_001439_020 Hb_003540_100 Hb_003540_100 Hb_011794_100--Hb_003540_100 Hb_006922_070 Hb_006922_070 Hb_011794_100--Hb_006922_070 Hb_000139_270 Hb_000139_270 Hb_011794_100--Hb_000139_270 Hb_000668_130 Hb_000668_130 Hb_011794_100--Hb_000668_130 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_000005_140--Hb_009662_070 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_053272_010--Hb_000099_140 Hb_053272_010--Hb_009662_070 Hb_053272_010--Hb_000005_140 Hb_002025_040 Hb_002025_040 Hb_053272_010--Hb_002025_040 Hb_029622_040 Hb_029622_040 Hb_009662_070--Hb_029622_040 Hb_009662_070--Hb_002025_040 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00793865 0.0602383 0.010163 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0362998 0 0.00722221 0.0766697

CAGE analysis