Hb_002405_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2405: 49393-52524
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_002529484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FJB5
description Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1
trembl
ID B9SU15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454760 PE=4 SV=1
Gene Ontology
ID GO:0016787
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25209: 49765-50100 , PASA_asmbl_25210: 50220-50450 , PASA_asmbl_25211: 51150-51434 , PASA_asmbl_25212: 51704-52032 , PASA_asmbl_25213: 52259-52613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002405_020 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_002149_040 0.0769599297 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000771_160 0.0988163075 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
4 Hb_001357_190 0.0996414537 - - ribonuclease III, putative [Ricinus communis]
5 Hb_001016_060 0.1052321232 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006173_020 0.1075454563 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
7 Hb_005410_010 0.1080989163 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
8 Hb_007111_040 0.1113946004 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
9 Hb_050964_020 0.1135350347 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
10 Hb_113216_010 0.1141929965 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
11 Hb_019871_020 0.1146073269 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
12 Hb_005016_030 0.1150734126 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
13 Hb_003581_110 0.1158393688 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
14 Hb_000392_280 0.1179171437 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
15 Hb_000270_450 0.1193071776 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
16 Hb_000322_170 0.1193183919 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
17 Hb_000185_090 0.1213807645 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
18 Hb_001178_060 0.1218185612 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
19 Hb_000732_020 0.1274584254 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
20 Hb_001776_080 0.1286670697 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002405_020 Hb_002405_020 Hb_002149_040 Hb_002149_040 Hb_002405_020--Hb_002149_040 Hb_000771_160 Hb_000771_160 Hb_002405_020--Hb_000771_160 Hb_001357_190 Hb_001357_190 Hb_002405_020--Hb_001357_190 Hb_001016_060 Hb_001016_060 Hb_002405_020--Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_002405_020--Hb_006173_020 Hb_005410_010 Hb_005410_010 Hb_002405_020--Hb_005410_010 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020 Hb_113216_010 Hb_113216_010 Hb_000771_160--Hb_113216_010 Hb_004669_040 Hb_004669_040 Hb_000771_160--Hb_004669_040 Hb_000185_090 Hb_000185_090 Hb_000771_160--Hb_000185_090 Hb_001582_030 Hb_001582_030 Hb_000771_160--Hb_001582_030 Hb_009615_110 Hb_009615_110 Hb_000771_160--Hb_009615_110 Hb_007441_070 Hb_007441_070 Hb_001357_190--Hb_007441_070 Hb_000395_140 Hb_000395_140 Hb_001357_190--Hb_000395_140 Hb_002675_190 Hb_002675_190 Hb_001357_190--Hb_002675_190 Hb_001357_190--Hb_002149_040 Hb_153547_010 Hb_153547_010 Hb_001357_190--Hb_153547_010 Hb_001016_060--Hb_006173_020 Hb_003605_070 Hb_003605_070 Hb_001016_060--Hb_003605_070 Hb_000692_260 Hb_000692_260 Hb_001016_060--Hb_000692_260 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340 Hb_006173_020--Hb_005016_030 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_000320_440 Hb_000320_440 Hb_006173_020--Hb_000320_440 Hb_000270_450 Hb_000270_450 Hb_006173_020--Hb_000270_450 Hb_012654_020 Hb_012654_020 Hb_005410_010--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_005410_010--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_005410_010--Hb_154381_050 Hb_005410_010--Hb_002149_040 Hb_001846_080 Hb_001846_080 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6375 4.97296 0.580409 2.63991 24.5578 18.0931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21095 5.98949 4.15596 3.17966 0.23295

CAGE analysis