Hb_002408_010

Information

Type -
Description -
Location Contig2408: 16832-42893
Sequence    

Annotation

kegg
ID rcu:RCOM_1707830
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_002518263.1
description cation-transporting atpase plant, putative [Ricinus communis]
swissprot
ID Q9LF79
description Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1
trembl
ID B9RWZ4
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1707830 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25238: 17008-17587 , PASA_asmbl_25239: 23010-23127 , PASA_asmbl_25240: 23234-23417 , PASA_asmbl_25241: 23418-23526 , PASA_asmbl_25242: 23527-24457 , PASA_asmbl_25244: 24561-33405 , PASA_asmbl_25245: 33485-35203 , PASA_asmbl_25246: 35204-38162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002408_010 0.0 - - cation-transporting atpase plant, putative [Ricinus communis]
2 Hb_000019_230 0.0945073745 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_003120_060 0.0957296998 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
4 Hb_000608_030 0.0977213209 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
5 Hb_005928_060 0.0993435569 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
6 Hb_000384_090 0.0994236609 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
7 Hb_000009_550 0.1006082453 - - hypothetical protein RCOM_0603640 [Ricinus communis]
8 Hb_002235_150 0.1041723445 - - -
9 Hb_008406_160 0.1041868635 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
10 Hb_000815_210 0.104795624 - - uncoupling protein 3, partial [Manihot esculenta]
11 Hb_003097_150 0.1049541953 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
12 Hb_003005_020 0.1058479601 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
13 Hb_015941_030 0.1065891489 - - unknown [Populus trichocarpa]
14 Hb_029584_080 0.1065953316 - - serine acetyltransferase [Hevea brasiliensis]
15 Hb_060809_010 0.1067338669 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
16 Hb_006816_150 0.1070144617 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
17 Hb_005237_010 0.107736601 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
18 Hb_000197_040 0.1080469189 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
19 Hb_015978_060 0.1099168425 - - unnamed protein product [Vitis vinifera]
20 Hb_003106_130 0.1108605776 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]

Gene co-expression network

sample Hb_002408_010 Hb_002408_010 Hb_000019_230 Hb_000019_230 Hb_002408_010--Hb_000019_230 Hb_003120_060 Hb_003120_060 Hb_002408_010--Hb_003120_060 Hb_000608_030 Hb_000608_030 Hb_002408_010--Hb_000608_030 Hb_005928_060 Hb_005928_060 Hb_002408_010--Hb_005928_060 Hb_000384_090 Hb_000384_090 Hb_002408_010--Hb_000384_090 Hb_000009_550 Hb_000009_550 Hb_002408_010--Hb_000009_550 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003120_060--Hb_003038_030 Hb_000608_030--Hb_000384_090 Hb_000608_030--Hb_003005_020 Hb_000815_210 Hb_000815_210 Hb_000608_030--Hb_000815_210 Hb_003406_010 Hb_003406_010 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_000608_030--Hb_003120_060 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_005928_060--Hb_001214_130 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_000384_090--Hb_003005_020 Hb_000384_090--Hb_003120_060 Hb_063134_010 Hb_063134_010 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060 Hb_029584_080 Hb_029584_080 Hb_000009_550--Hb_029584_080 Hb_010710_110 Hb_010710_110 Hb_000009_550--Hb_010710_110 Hb_000923_020 Hb_000923_020 Hb_000009_550--Hb_000923_020 Hb_005307_030 Hb_005307_030 Hb_000009_550--Hb_005307_030 Hb_003097_150 Hb_003097_150 Hb_000009_550--Hb_003097_150 Hb_015941_030 Hb_015941_030 Hb_000009_550--Hb_015941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.1403 39.6682 15.255 30.7917 132.823 116.931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.5514 82.1758 44.004 22.6765 26.0386

CAGE analysis