Hb_002408_020

Information

Type -
Description -
Location Contig2408: 44828-48826
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074442.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9RWY7
description Choline monooxygenase, putative OS=Ricinus communis GN=RCOM_1706760 PE=4 SV=1
Gene Ontology
ID GO:0005488
description choline chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25247: 44989-46981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002408_020 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
2 Hb_000061_210 0.0669999907 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
3 Hb_000260_030 0.0716077703 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_004324_270 0.0745713191 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
5 Hb_029879_130 0.0757171841 - - Derlin-2, putative [Ricinus communis]
6 Hb_012675_050 0.0769908495 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_110 0.0777867479 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010361_010 0.0787379547 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
9 Hb_000783_020 0.0792665401 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
10 Hb_011457_050 0.0794406981 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
11 Hb_000827_050 0.0802124369 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_000985_030 0.0803174633 - - PREDICTED: RRP15-like protein [Populus euphratica]
13 Hb_012423_030 0.0806933196 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000614_160 0.0808680368 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
15 Hb_004934_100 0.082088589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001489_080 0.0835898591 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_103118_010 0.0855947939 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
18 Hb_032264_070 0.0855995338 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_008453_030 0.0874878841 - - Thioredoxin superfamily protein [Theobroma cacao]
20 Hb_000436_130 0.0890611045 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_002408_020 Hb_002408_020 Hb_000061_210 Hb_000061_210 Hb_002408_020--Hb_000061_210 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_004324_270 Hb_004324_270 Hb_002408_020--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_002408_020--Hb_012675_050 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_003768_030 Hb_003768_030 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_029879_130--Hb_004109_170 Hb_004635_100 Hb_004635_100 Hb_029879_130--Hb_004635_100 Hb_001902_140 Hb_001902_140 Hb_029879_130--Hb_001902_140 Hb_029879_130--Hb_000614_160 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_012675_050--Hb_000046_050 Hb_012675_050--Hb_103118_010 Hb_012799_170 Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.21772 5.4008 9.72633 8.08109 10.1185 8.38612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7885 17.8429 16.2093 7.51303 13.4646

CAGE analysis