Hb_002411_030

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig2411: 28399-34625
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19130g
description POPTRDRAFT_647368; transcription factor family protein
nr
ID XP_012068734.1
description PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
swissprot
ID A0JPP1
description Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
trembl
ID A0A067L7U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24574 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dr1-associated corepressor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25252: 28397-34559
cDNA
(Sanger)
(ID:Location)		 019_P18.ab1: 28397-33737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_030 0.0 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
2 Hb_000983_090 0.0668639995 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
3 Hb_005137_050 0.0719812153 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
4 Hb_005541_010 0.0770047604 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
5 Hb_001728_050 0.0795945056 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
6 Hb_000130_240 0.0823179957 - - hypothetical protein RCOM_1520720 [Ricinus communis]
7 Hb_005675_040 0.0823571997 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
8 Hb_002636_100 0.0845463761 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
9 Hb_001247_130 0.0860174204 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
10 Hb_005016_160 0.0863438889 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_004109_040 0.0866240112 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
12 Hb_002263_040 0.0867820006 - - carbon catabolite repressor protein, putative [Ricinus communis]
13 Hb_001005_190 0.0870125574 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
14 Hb_000803_070 0.0903101555 - - PREDICTED: protein TRAUCO [Jatropha curcas]
15 Hb_003052_140 0.0904753508 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
16 Hb_077562_050 0.0927593102 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
17 Hb_012779_090 0.0928363956 - - PREDICTED: lipase member N [Jatropha curcas]
18 Hb_001828_130 0.0932563599 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
19 Hb_011491_010 0.0935140661 - - Protein YME1, putative [Ricinus communis]
20 Hb_111198_010 0.0935419862 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002411_030 Hb_002411_030 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_000856_190 Hb_000856_190 Hb_000983_090--Hb_000856_190 Hb_012762_030 Hb_012762_030 Hb_000983_090--Hb_012762_030 Hb_004204_170 Hb_004204_170 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_005137_050--Hb_000130_240 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005016_160 Hb_005016_160 Hb_005541_010--Hb_005016_160 Hb_003052_140 Hb_003052_140 Hb_005541_010--Hb_003052_140 Hb_000334_220 Hb_000334_220 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_000803_070 Hb_000803_070 Hb_001728_050--Hb_000803_070 Hb_004357_020 Hb_004357_020 Hb_001728_050--Hb_004357_020 Hb_001751_140 Hb_001751_140 Hb_001728_050--Hb_001751_140 Hb_001728_050--Hb_001247_130 Hb_003927_040 Hb_003927_040 Hb_001728_050--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_001728_050--Hb_032264_060 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_000130_240--Hb_001247_130 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_000130_240--Hb_032208_040 Hb_005675_040--Hb_003052_140 Hb_000125_170 Hb_000125_170 Hb_005675_040--Hb_000125_170 Hb_005675_040--Hb_140506_010 Hb_005675_040--Hb_005541_010 Hb_004767_050 Hb_004767_050 Hb_005675_040--Hb_004767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4117 78.1941 47.5731 22.4665 44.7532 43.1694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4621 49.8966 52.6326 29.0281 22.6339

CAGE analysis