Hb_002411_050

Information

Type -
Description -
Location Contig2411: 38130-43397
Sequence    

Annotation

kegg
ID rcu:RCOM_0621390
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_012068729.1
description PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
swissprot
ID Q6A152
description Cytochrome P450 4X1 OS=Mus musculus GN=Cyp4x1 PE=1 SV=1
trembl
ID A0A067KZZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24572 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_050 0.0 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
2 Hb_056753_010 0.1240924504 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000977_110 0.1326236292 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
4 Hb_004679_050 0.1360127732 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
5 Hb_001486_180 0.1378184588 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
6 Hb_029584_050 0.1410992554 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
7 Hb_008616_070 0.1411860832 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
8 Hb_001507_040 0.1440006686 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006615_020 0.1463173058 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
10 Hb_004705_120 0.14704879 - - ATP binding protein, putative [Ricinus communis]
11 Hb_010174_060 0.1480540983 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_002799_040 0.1482532289 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
13 Hb_005098_030 0.1491873471 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
14 Hb_003291_010 0.1494672489 - - ATP-dependent protease La, putative [Ricinus communis]
15 Hb_015778_010 0.1498196197 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
16 Hb_000300_290 0.1548537505 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
17 Hb_000789_220 0.1559033729 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_002799_070 0.1581138524 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
19 Hb_000731_260 0.1615777554 - - hypothetical protein RCOM_0905090 [Ricinus communis]
20 Hb_000165_160 0.161738911 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002411_050 Hb_002411_050 Hb_056753_010 Hb_056753_010 Hb_002411_050--Hb_056753_010 Hb_000977_110 Hb_000977_110 Hb_002411_050--Hb_000977_110 Hb_004679_050 Hb_004679_050 Hb_002411_050--Hb_004679_050 Hb_001486_180 Hb_001486_180 Hb_002411_050--Hb_001486_180 Hb_029584_050 Hb_029584_050 Hb_002411_050--Hb_029584_050 Hb_008616_070 Hb_008616_070 Hb_002411_050--Hb_008616_070 Hb_056753_010--Hb_004679_050 Hb_000789_220 Hb_000789_220 Hb_056753_010--Hb_000789_220 Hb_001507_040 Hb_001507_040 Hb_056753_010--Hb_001507_040 Hb_002799_040 Hb_002799_040 Hb_056753_010--Hb_002799_040 Hb_000731_260 Hb_000731_260 Hb_056753_010--Hb_000731_260 Hb_000977_110--Hb_001486_180 Hb_003291_010 Hb_003291_010 Hb_000977_110--Hb_003291_010 Hb_000976_300 Hb_000976_300 Hb_000977_110--Hb_000976_300 Hb_000999_050 Hb_000999_050 Hb_000977_110--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_000977_110--Hb_004607_050 Hb_004837_130 Hb_004837_130 Hb_000977_110--Hb_004837_130 Hb_005098_030 Hb_005098_030 Hb_004679_050--Hb_005098_030 Hb_004679_050--Hb_000731_260 Hb_004679_050--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_004679_050--Hb_011671_450 Hb_004679_050--Hb_002799_040 Hb_001486_180--Hb_003291_010 Hb_001486_180--Hb_000999_050 Hb_006615_020 Hb_006615_020 Hb_001486_180--Hb_006615_020 Hb_001486_180--Hb_004607_050 Hb_003688_150 Hb_003688_150 Hb_001486_180--Hb_003688_150 Hb_000015_040 Hb_000015_040 Hb_029584_050--Hb_000015_040 Hb_001439_100 Hb_001439_100 Hb_029584_050--Hb_001439_100 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60798 6.29955 4.16499 7.09212 5.29805 4.19331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8465 4.82504 16.6282 11.4985 7.22515

CAGE analysis