Hb_002411_070

Information

Type -
Description -
Location Contig2411: 64244-66530
Sequence    

Annotation

kegg
ID rcu:RCOM_0621350
description Auxin-induced protein 5NG4, putative
nr
ID XP_012068727.1
description PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID A0A067KWI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25258: 64197-65454 , PASA_asmbl_25259: 65553-66342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_070 0.0 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
2 Hb_004125_080 0.0637483138 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
3 Hb_000373_110 0.0650939409 - - Nodulin, putative [Ricinus communis]
4 Hb_023536_020 0.0654356308 - - Nicotianamine synthase, putative [Ricinus communis]
5 Hb_006590_040 0.0683105704 - - amino acid permease, putative [Ricinus communis]
6 Hb_002374_070 0.068442452 - - amino acid transporter, putative [Ricinus communis]
7 Hb_002116_020 0.0806719236 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
8 Hb_168031_010 0.0852078097 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
9 Hb_000433_060 0.0954574218 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
10 Hb_008200_010 0.0956659453 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
11 Hb_174644_010 0.0998077927 - - -
12 Hb_005695_050 0.1152900586 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
13 Hb_005054_010 0.1189201663 - - amino acid transporter, putative [Ricinus communis]
14 Hb_003839_060 0.1223176948 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
15 Hb_031022_040 0.124251016 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
16 Hb_000056_180 0.126100713 - - -
17 Hb_000061_080 0.126939326 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
18 Hb_003059_060 0.1283445975 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
19 Hb_014214_010 0.1285953148 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
20 Hb_000903_050 0.1290848522 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]

Gene co-expression network

sample Hb_002411_070 Hb_002411_070 Hb_004125_080 Hb_004125_080 Hb_002411_070--Hb_004125_080 Hb_000373_110 Hb_000373_110 Hb_002411_070--Hb_000373_110 Hb_023536_020 Hb_023536_020 Hb_002411_070--Hb_023536_020 Hb_006590_040 Hb_006590_040 Hb_002411_070--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_002411_070--Hb_002374_070 Hb_002116_020 Hb_002116_020 Hb_002411_070--Hb_002116_020 Hb_004125_080--Hb_006590_040 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_002116_020 Hb_008200_010 Hb_008200_010 Hb_004125_080--Hb_008200_010 Hb_004125_080--Hb_000373_110 Hb_168031_010 Hb_168031_010 Hb_000373_110--Hb_168031_010 Hb_000373_110--Hb_023536_020 Hb_000373_110--Hb_002116_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060 Hb_174644_010 Hb_174644_010 Hb_023536_020--Hb_174644_010 Hb_023536_020--Hb_002374_070 Hb_003839_060 Hb_003839_060 Hb_023536_020--Hb_003839_060 Hb_023536_020--Hb_000433_060 Hb_006590_040--Hb_002116_020 Hb_006590_040--Hb_168031_010 Hb_006590_040--Hb_008200_010 Hb_006590_040--Hb_002374_070 Hb_002374_070--Hb_008200_010 Hb_002374_070--Hb_002116_020 Hb_002116_020--Hb_168031_010 Hb_005054_010 Hb_005054_010 Hb_002116_020--Hb_005054_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225581 23.9141 1.11963 58.6527 0.0499093 0.172555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0396223 0.0935039 0 0.037443 0.839465

CAGE analysis