Hb_002411_100

Information

Type -
Description -
Location Contig2411: 89021-91879
Sequence    

Annotation

kegg
ID rcu:RCOM_0621010
description hypothetical protein
nr
ID XP_012068724.1
description PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24567 PE=4 SV=1
Gene Ontology
ID GO:0009535
description proline-rich family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25262: 89000-91846 , PASA_asmbl_25263: 88683-89249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_100 0.0 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
2 Hb_003948_020 0.0621574458 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
3 Hb_010557_010 0.0682247229 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
4 Hb_000703_070 0.083249723 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
5 Hb_001047_180 0.0890386518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004459_060 0.0937877748 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
7 Hb_005563_040 0.0957896344 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
8 Hb_003549_140 0.100185796 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_011114_020 0.1009682123 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_000045_050 0.1014124548 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
11 Hb_005488_160 0.1020736786 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_000442_070 0.1026993513 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
13 Hb_006620_070 0.1039158969 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
14 Hb_002272_220 0.1047394021 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000146_030 0.1048697709 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
16 Hb_000803_170 0.1051063222 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
17 Hb_000061_250 0.1051300094 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
18 Hb_058620_080 0.105543262 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
19 Hb_006829_080 0.1064947893 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_027298_020 0.1101101268 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]

Gene co-expression network

sample Hb_002411_100 Hb_002411_100 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_010557_010--Hb_000045_050 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380 Hb_000146_030 Hb_000146_030 Hb_001047_180--Hb_000146_030 Hb_001047_180--Hb_010557_010 Hb_006583_030 Hb_006583_030 Hb_001047_180--Hb_006583_030 Hb_001047_180--Hb_000703_070 Hb_004007_170 Hb_004007_170 Hb_001047_180--Hb_004007_170 Hb_006620_070 Hb_006620_070 Hb_004459_060--Hb_006620_070 Hb_007694_060 Hb_007694_060 Hb_004459_060--Hb_007694_060 Hb_004459_060--Hb_000146_030 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_000005_130 Hb_000005_130 Hb_004459_060--Hb_000005_130 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.15609 7.65905 96.6262 33.8685 5.6147 5.29834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6933 11.8829 7.34318 8.59754 101.981

CAGE analysis