Hb_002411_120

Information

Type -
Description -
Location Contig2411: 119267-127793
Sequence    

Annotation

kegg
ID rcu:RCOM_0620480
description hypothetical protein
nr
ID XP_012069216.1
description PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SHS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0620480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25269: 119891-120641 , PASA_asmbl_25271: 123551-125856 , PASA_asmbl_25272: 123551-125856 , PASA_asmbl_25273: 126084-126493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_120 0.0 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
2 Hb_000594_020 0.0702008782 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
3 Hb_009151_020 0.0724825604 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
4 Hb_001080_270 0.0754062673 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
5 Hb_020665_030 0.0781860544 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002499_070 0.0820771635 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
7 Hb_004899_070 0.0824376693 - - PREDICTED: RRP12-like protein [Jatropha curcas]
8 Hb_000813_100 0.0829340033 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
9 Hb_002235_320 0.0835001326 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
10 Hb_001417_050 0.0864356425 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_005895_040 0.086653147 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
12 Hb_000347_570 0.0869552086 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
13 Hb_004225_130 0.0872337486 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
14 Hb_000239_070 0.0877541087 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
15 Hb_001946_300 0.0894055334 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_027073_060 0.0902859918 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
17 Hb_000475_020 0.0904811288 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
18 Hb_000424_010 0.0915452942 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
19 Hb_001771_120 0.0916922022 - - K+ transport growth defect-like protein [Hevea brasiliensis]
20 Hb_147737_010 0.0924105658 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002411_120 Hb_002411_120 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_001080_270--Hb_000813_100 Hb_020665_030--Hb_000329_130 Hb_020665_030--Hb_000347_570 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_003847_120 Hb_003847_120 Hb_020665_030--Hb_003847_120 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_002499_070--Hb_144787_030 Hb_005895_040 Hb_005895_040 Hb_002499_070--Hb_005895_040 Hb_001902_060 Hb_001902_060 Hb_002499_070--Hb_001902_060 Hb_000152_340 Hb_000152_340 Hb_002499_070--Hb_000152_340 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_004899_070--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40809 10.5724 3.473 3.84786 15.9995 15.2143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33214 3.8832 3.42873 4.21188 4.4422

CAGE analysis