Hb_002411_160

Information

Type -
Description -
Location Contig2411: 144129-148961
Sequence    

Annotation

kegg
ID rcu:RCOM_1264330
description hypothetical protein
nr
ID XP_012068717.1
description PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SVG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1264330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25275: 145616-146323 , PASA_asmbl_25276: 144257-147929 , PASA_asmbl_25277: 144257-147929 , PASA_asmbl_25278: 147755-148881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_160 0.0 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
2 Hb_086639_050 0.0937711655 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_080147_020 0.0990917463 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
4 Hb_001001_090 0.1098455865 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
5 Hb_000649_330 0.110085634 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
6 Hb_114943_020 0.1148806965 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
7 Hb_000098_180 0.117307252 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_000567_090 0.1185891539 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
9 Hb_000015_150 0.1220831858 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
10 Hb_002259_220 0.1239198774 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
11 Hb_009078_020 0.124297094 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
12 Hb_000111_390 0.1289369794 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
13 Hb_001514_240 0.1308428101 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_001059_060 0.1310157366 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
15 Hb_000853_330 0.1320004858 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
16 Hb_001117_080 0.1325937627 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
17 Hb_011188_010 0.1327262371 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
18 Hb_001247_210 0.1330344475 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002249_170 0.1338218523 - - copine, putative [Ricinus communis]
20 Hb_006949_060 0.1346983338 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002411_160 Hb_002411_160 Hb_086639_050 Hb_086639_050 Hb_002411_160--Hb_086639_050 Hb_080147_020 Hb_080147_020 Hb_002411_160--Hb_080147_020 Hb_001001_090 Hb_001001_090 Hb_002411_160--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_002411_160--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_002411_160--Hb_114943_020 Hb_000098_180 Hb_000098_180 Hb_002411_160--Hb_000098_180 Hb_086639_050--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_086639_050--Hb_001117_080 Hb_002249_170 Hb_002249_170 Hb_086639_050--Hb_002249_170 Hb_000567_090 Hb_000567_090 Hb_086639_050--Hb_000567_090 Hb_000111_390 Hb_000111_390 Hb_086639_050--Hb_000111_390 Hb_080147_020--Hb_000567_090 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_001001_090--Hb_000649_330 Hb_005214_070 Hb_005214_070 Hb_001001_090--Hb_005214_070 Hb_009078_020 Hb_009078_020 Hb_001001_090--Hb_009078_020 Hb_011188_010 Hb_011188_010 Hb_001001_090--Hb_011188_010 Hb_000015_150 Hb_000015_150 Hb_001001_090--Hb_000015_150 Hb_001663_130 Hb_001663_130 Hb_001001_090--Hb_001663_130 Hb_000649_330--Hb_000015_150 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_000649_330--Hb_011188_010 Hb_000649_330--Hb_005214_070 Hb_114943_020--Hb_000015_150 Hb_000363_180 Hb_000363_180 Hb_114943_020--Hb_000363_180 Hb_002740_040 Hb_002740_040 Hb_114943_020--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_114943_020--Hb_000470_110 Hb_005833_030 Hb_005833_030 Hb_114943_020--Hb_005833_030 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94149 37.5178 51.5939 36.1388 4.55385 9.38429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.91889 2.27434 3.56742 27.3606 22.0053

CAGE analysis