Hb_002411_170

Information

Type -
Description -
Location Contig2411: 150665-153021
Sequence    

Annotation

kegg
ID tcc:TCM_014470
description Uncharacterized protein isoform 1
nr
ID XP_012068715.1
description PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
swissprot
ID Q9VKV8
description Cilia- and flagella-associated protein 20 OS=Drosophila melanogaster GN=CFAP20 PE=1 SV=1
trembl
ID A0A067KZY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24562 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25280: 151367-151645 , PASA_asmbl_25281: 150689-152805 , PASA_asmbl_25282: 150877-151261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_170 0.0 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
2 Hb_004440_050 0.05745372 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
3 Hb_003038_030 0.0613135801 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
4 Hb_125000_010 0.0622346625 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
5 Hb_148912_010 0.0633045795 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010180_020 0.0637832803 - - hypothetical protein glysoja_030394 [Glycine soja]
7 Hb_001604_080 0.0638345181 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
8 Hb_079820_010 0.069762105 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
9 Hb_063716_050 0.0739378881 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
10 Hb_000340_300 0.0739598528 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
11 Hb_003687_110 0.074599331 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
12 Hb_004545_060 0.0768726148 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
13 Hb_003005_020 0.0794025611 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
14 Hb_004440_090 0.0833798042 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
15 Hb_000398_180 0.0844289331 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
16 Hb_000243_030 0.0846434756 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_010436_070 0.0850097878 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
18 Hb_001195_760 0.0854736975 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
19 Hb_001369_660 0.0855935864 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
20 Hb_000019_230 0.0866341486 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002411_170 Hb_002411_170 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_003038_030 Hb_003038_030 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_001369_660 Hb_001369_660 Hb_004440_050--Hb_001369_660 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_004440_050--Hb_010180_020 Hb_003038_030--Hb_148912_010 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040 Hb_148912_010--Hb_000172_370 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_148912_010--Hb_125000_010 Hb_010180_020--Hb_001604_080 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8093 10.6833 15.89 16.1172 33.8379 50.8024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.4198 49.6989 29.3866 9.06091 10.1355

CAGE analysis