Hb_002411_180

Information

Type -
Description -
Location Contig2411: 153936-165004
Sequence    

Annotation

kegg
ID rcu:RCOM_1264550
description nuclear matrix protein, putative
nr
ID XP_012068712.1
description PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
swissprot
ID Q93VM9
description THO complex subunit 1 OS=Arabidopsis thaliana GN=THO1 PE=1 SV=1
trembl
ID A0A067KWL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24561 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tho complex subunit 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25284: 153956-164894 , PASA_asmbl_25285: 155771-155890 , PASA_asmbl_25286: 157778-158020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_180 0.0 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
2 Hb_009838_130 0.0774280244 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
3 Hb_001396_290 0.083880359 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_008518_050 0.0900542744 - - hypothetical protein F383_31148 [Gossypium arboreum]
5 Hb_009913_050 0.0924858613 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
6 Hb_005214_060 0.0928189686 - - catalytic, putative [Ricinus communis]
7 Hb_002048_090 0.0956355437 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
8 Hb_000186_260 0.1006431594 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
9 Hb_000504_160 0.1033329842 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
10 Hb_001910_020 0.1097731839 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
11 Hb_007643_050 0.1098795137 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_031091_010 0.1108378191 - - crooked neck protein, putative [Ricinus communis]
13 Hb_023020_060 0.111652158 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
14 Hb_000343_210 0.1119266126 - - ran-binding protein, putative [Ricinus communis]
15 Hb_000120_510 0.11207511 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
16 Hb_001863_260 0.1126529088 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001616_090 0.1165189841 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
18 Hb_017259_010 0.1184567705 - - -
19 Hb_001085_320 0.1195779983 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
20 Hb_002942_080 0.1200532162 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]

Gene co-expression network

sample Hb_002411_180 Hb_002411_180 Hb_009838_130 Hb_009838_130 Hb_002411_180--Hb_009838_130 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_008518_050 Hb_008518_050 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090 Hb_017259_010 Hb_017259_010 Hb_009838_130--Hb_017259_010 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_007643_050 Hb_007643_050 Hb_009838_130--Hb_007643_050 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_028707_090 Hb_028707_090 Hb_008518_050--Hb_028707_090 Hb_008518_050--Hb_000504_160 Hb_000640_020 Hb_000640_020 Hb_008518_050--Hb_000640_020 Hb_008518_050--Hb_001396_290 Hb_002411_120 Hb_002411_120 Hb_008518_050--Hb_002411_120 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_009913_050--Hb_001396_290 Hb_009913_050--Hb_002048_090 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020 Hb_005214_060--Hb_002942_080 Hb_002675_060 Hb_002675_060 Hb_005214_060--Hb_002675_060 Hb_000213_070 Hb_000213_070 Hb_005214_060--Hb_000213_070 Hb_000331_190 Hb_000331_190 Hb_005214_060--Hb_000331_190 Hb_024990_010 Hb_024990_010 Hb_005214_060--Hb_024990_010 Hb_002048_090--Hb_073171_080 Hb_000244_240 Hb_000244_240 Hb_002048_090--Hb_000244_240 Hb_002048_090--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002048_090--Hb_002883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.885 38.6291 28.8709 21.021 60.1678 80.618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.4738 18.9161 7.06062 16.6384 14.3799

CAGE analysis