Hb_002411_190

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2411: 167310-170624
Sequence    

Annotation

kegg
ID rcu:RCOM_1298580
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012069214.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID B9S054
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1298580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25290: 168548-168657 , PASA_asmbl_25293: 170348-170474 , PASA_asmbl_25294: 171496-177827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_190 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_001635_210 0.0691096728 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
3 Hb_007012_030 0.0810714048 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
4 Hb_002600_070 0.09027229 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
5 Hb_009158_060 0.090629351 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
6 Hb_168893_030 0.0919539175 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
7 Hb_000748_090 0.0963949637 - - glucose inhibited division protein A, putative [Ricinus communis]
8 Hb_004324_360 0.0968541804 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
9 Hb_000359_130 0.0983180742 - - 4-hydroxyphenylpyruvate dioxygenase [Hevea brasiliensis]
10 Hb_000826_030 0.1037372435 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
11 Hb_001377_040 0.1038001937 - - chitinase, putative [Ricinus communis]
12 Hb_008642_060 0.1040179117 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
13 Hb_000771_170 0.1040180523 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_089246_010 0.1043901209 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
15 Hb_005305_130 0.1048697482 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
16 Hb_001008_070 0.1064821746 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
17 Hb_068804_090 0.1069008231 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
18 Hb_000482_050 0.1071211994 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
19 Hb_013459_020 0.1078479398 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
20 Hb_002249_030 0.1081211836 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002411_190 Hb_002411_190 Hb_001635_210 Hb_001635_210 Hb_002411_190--Hb_001635_210 Hb_007012_030 Hb_007012_030 Hb_002411_190--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_002411_190--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_002411_190--Hb_009158_060 Hb_168893_030 Hb_168893_030 Hb_002411_190--Hb_168893_030 Hb_000748_090 Hb_000748_090 Hb_002411_190--Hb_000748_090 Hb_000445_060 Hb_000445_060 Hb_001635_210--Hb_000445_060 Hb_008642_060 Hb_008642_060 Hb_001635_210--Hb_008642_060 Hb_000359_130 Hb_000359_130 Hb_001635_210--Hb_000359_130 Hb_000868_120 Hb_000868_120 Hb_001635_210--Hb_000868_120 Hb_005288_070 Hb_005288_070 Hb_001635_210--Hb_005288_070 Hb_007012_030--Hb_000748_090 Hb_007012_030--Hb_002600_070 Hb_068804_090 Hb_068804_090 Hb_007012_030--Hb_068804_090 Hb_000617_250 Hb_000617_250 Hb_007012_030--Hb_000617_250 Hb_000482_050 Hb_000482_050 Hb_007012_030--Hb_000482_050 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_002600_070--Hb_000748_090 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_002600_070--Hb_009158_060 Hb_005305_130 Hb_005305_130 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_000826_030 Hb_000826_030 Hb_168893_030--Hb_000826_030 Hb_012438_030 Hb_012438_030 Hb_168893_030--Hb_012438_030 Hb_168893_030--Hb_004324_360 Hb_002675_250 Hb_002675_250 Hb_168893_030--Hb_002675_250 Hb_002684_020 Hb_002684_020 Hb_168893_030--Hb_002684_020 Hb_000748_090--Hb_068804_090 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000748_090--Hb_000482_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.688542 1.80734 2.64246 0.942167 0.708541 1.10781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.887402 0.503211 0.728016 1.43705 2.56806

CAGE analysis