Hb_002411_200

Information

Type -
Description -
Location Contig2411: 171568-176334
Sequence    

Annotation

kegg
ID rcu:RCOM_1264730
description hypothetical protein
nr
ID XP_002529994.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A8K979
description ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
trembl
ID B9SVH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1264730 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 3 -5 exoribonuclease 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25294: 171496-177827 , PASA_asmbl_25296: 174674-175011
cDNA
(Sanger)
(ID:Location)		 010_J08.ab1: 174934-177827 , 013_M22.ab1: 172862-177825

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_021650_030 0.055591233 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
3 Hb_000086_570 0.0649284527 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
4 Hb_000091_090 0.065800442 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_014720_080 0.0735812231 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
6 Hb_001881_020 0.0801292593 - - clathrin binding protein, putative [Ricinus communis]
7 Hb_020178_070 0.0815491199 - - Protein Z, putative [Ricinus communis]
8 Hb_071736_020 0.0820810985 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
9 Hb_000840_210 0.0822310534 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
10 Hb_003052_100 0.082885315 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000665_040 0.0853541099 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
12 Hb_001366_200 0.085476447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000567_260 0.0867660858 - - BnaA09g41440D [Brassica napus]
14 Hb_000174_070 0.087341697 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
15 Hb_003151_050 0.0890584061 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
16 Hb_002078_450 0.0891621156 - - nuclear transport factor, putative [Ricinus communis]
17 Hb_055062_030 0.0910030266 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
18 Hb_001671_020 0.0924850614 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
19 Hb_000496_060 0.0926216782 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
20 Hb_008289_060 0.0930806432 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002411_200 Hb_002411_200 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_021650_030--Hb_000091_090 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_021650_030--Hb_014720_080 Hb_021650_030--Hb_001881_020 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_001881_020--Hb_020178_070 Hb_001881_020--Hb_000086_570 Hb_001248_130 Hb_001248_130 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_020178_070--Hb_021650_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
220.794 104.527 29.3149 77.9323 160.172 228.193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
405.182 278.415 332.113 99.2667 45.5551

CAGE analysis