Hb_002414_050

Information

Type -
Description -
Location Contig2414: 32197-34730
Sequence    

Annotation

kegg
ID cic:CICLE_v10000243mg
description hypothetical protein
nr
ID XP_006432665.1
description hypothetical protein CICLE_v10000243mg [Citrus clementina]
swissprot
ID Q9C516
description Extra-large guanine nucleotide-binding protein 3 OS=Arabidopsis thaliana GN=XLG3 PE=1 SV=1
trembl
ID V4T3C9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000243mg PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25311: 32350-32732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002414_050 0.0 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
2 Hb_001662_100 0.0504155965 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
3 Hb_003544_160 0.0536193227 - - -
4 Hb_000022_020 0.0628565299 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
5 Hb_003517_040 0.0692640623 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
6 Hb_004452_110 0.0696141635 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
7 Hb_056691_060 0.0704517852 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
8 Hb_000521_250 0.0716456762 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
9 Hb_000830_030 0.0727343434 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
10 Hb_009569_040 0.0735707514 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
11 Hb_000429_150 0.0736618372 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
12 Hb_000053_040 0.0756512693 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
13 Hb_000138_100 0.0761700979 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
14 Hb_001442_060 0.0773629678 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
15 Hb_013726_090 0.0774906533 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
16 Hb_002883_030 0.0776432292 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
17 Hb_004679_030 0.0778101666 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
18 Hb_122968_010 0.0780768681 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
19 Hb_004567_090 0.0797740072 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
20 Hb_003734_010 0.0799007544 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]

Gene co-expression network

sample Hb_002414_050 Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_002414_050--Hb_001662_100 Hb_003544_160 Hb_003544_160 Hb_002414_050--Hb_003544_160 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_004679_030 Hb_004679_030 Hb_003544_160--Hb_004679_030 Hb_002768_060 Hb_002768_060 Hb_003544_160--Hb_002768_060 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_000022_020--Hb_004452_110 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_004452_110--Hb_000345_160 Hb_004452_110--Hb_000976_140 Hb_000300_270 Hb_000300_270 Hb_004452_110--Hb_000300_270 Hb_002046_160 Hb_002046_160 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_056691_060--Hb_000830_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.00326 11.6247 8.92554 18.3493 11.0094 15.8087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9282 10.5061 8.93698 15.2077 18.9471

CAGE analysis