Hb_002414_060

Information

Type -
Description -
Location Contig2414: 45053-49616
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G0011001
description hypothetical protein
nr
ID KCW72856.1
description hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059C3T8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01310 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002414_060 0.0 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
2 Hb_000429_150 0.0740487316 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
3 Hb_143629_130 0.0833363844 - - unnamed protein product [Coffea canephora]
4 Hb_007558_100 0.0852298262 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
5 Hb_004317_060 0.0879056184 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_138475_010 0.1001159027 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
7 Hb_000140_280 0.1009791243 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
8 Hb_001662_100 0.1048123984 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
9 Hb_000208_280 0.1051614672 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
10 Hb_099878_030 0.1051688053 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
11 Hb_012322_010 0.1084135129 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_187953_010 0.1118386462 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
13 Hb_007638_030 0.1126286949 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
14 Hb_000069_210 0.1128574679 - - PREDICTED: exportin-2 [Jatropha curcas]
15 Hb_002414_050 0.1135306124 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
16 Hb_003544_050 0.1148702742 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
17 Hb_000718_080 0.1169365042 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
18 Hb_003544_160 0.1179297969 - - -
19 Hb_179306_020 0.1179975316 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
20 Hb_001437_190 0.1180393721 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002414_060 Hb_002414_060 Hb_000429_150 Hb_000429_150 Hb_002414_060--Hb_000429_150 Hb_143629_130 Hb_143629_130 Hb_002414_060--Hb_143629_130 Hb_007558_100 Hb_007558_100 Hb_002414_060--Hb_007558_100 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_143629_130--Hb_004317_060 Hb_007558_100--Hb_000429_150 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_007558_100--Hb_002686_310 Hb_055062_040 Hb_055062_040 Hb_007558_100--Hb_055062_040 Hb_084670_010 Hb_084670_010 Hb_007558_100--Hb_084670_010 Hb_000270_390 Hb_000270_390 Hb_004317_060--Hb_000270_390 Hb_001437_190 Hb_001437_190 Hb_004317_060--Hb_001437_190 Hb_004317_060--Hb_084670_010 Hb_004317_060--Hb_007558_100 Hb_000237_040 Hb_000237_040 Hb_004317_060--Hb_000237_040 Hb_138475_010--Hb_007558_100 Hb_008970_030 Hb_008970_030 Hb_138475_010--Hb_008970_030 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_062537_010 Hb_062537_010 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160 Hb_000140_280--Hb_007638_030 Hb_000159_090 Hb_000159_090 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94349 3.05917 1.5004 7.13259 1.89376 6.24569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11243 3.30334 2.8469 5.51887 5.09876

CAGE analysis