Hb_002419_030

Information

Type -
Description -
Location Contig2419: 40043-47647
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002419_030 0.0 - - -
2 Hb_001010_070 0.1471233117 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_009270_010 0.1555038773 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
4 Hb_000136_040 0.1563468184 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
5 Hb_004448_090 0.1627891771 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
6 Hb_000470_080 0.1677336077 - - Caldesmon, putative [Ricinus communis]
7 Hb_003206_020 0.1705119136 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
8 Hb_020665_010 0.1762718065 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
9 Hb_002304_070 0.1810941542 - - -
10 Hb_172970_010 0.1824859607 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
11 Hb_007805_010 0.1829627741 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
12 Hb_001117_170 0.1834122148 - - -
13 Hb_012180_030 0.1884070945 - - unnamed protein product [Vitis vinifera]
14 Hb_000071_180 0.1886670474 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
15 Hb_011928_020 0.1959938737 - - something about silencing protein sas10, putative [Ricinus communis]
16 Hb_145915_010 0.196030112 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
17 Hb_008447_040 0.1972843836 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
18 Hb_003170_040 0.1980562406 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
19 Hb_171789_010 0.1982524101 - - phosphoenolpyruvate carboxylase [Glycine max]
20 Hb_000062_450 0.1992453542 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]

Gene co-expression network

sample Hb_002419_030 Hb_002419_030 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_009270_010 Hb_009270_010 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_004448_090 Hb_004448_090 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001010_070--Hb_020665_010 Hb_000684_440 Hb_000684_440 Hb_001010_070--Hb_000684_440 Hb_002304_070 Hb_002304_070 Hb_001010_070--Hb_002304_070 Hb_001010_070--Hb_009270_010 Hb_008447_040 Hb_008447_040 Hb_001010_070--Hb_008447_040 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_009270_010--Hb_020665_010 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_145915_010 Hb_145915_010 Hb_009270_010--Hb_145915_010 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_004448_090--Hb_008447_040 Hb_127552_060 Hb_127552_060 Hb_004448_090--Hb_127552_060 Hb_028912_040 Hb_028912_040 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_007805_010 Hb_007805_010 Hb_000470_080--Hb_007805_010 Hb_005679_050 Hb_005679_050 Hb_000470_080--Hb_005679_050 Hb_002974_060 Hb_002974_060 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_003206_020--Hb_020665_010 Hb_007101_200 Hb_007101_200 Hb_003206_020--Hb_007101_200 Hb_003206_020--Hb_145915_010 Hb_003206_020--Hb_009270_010 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.151601 0.109017 0.0346943 0.0464215 0.255961 0.657858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.298486 0.0781962 0.273926 0.512786 0.454703

CAGE analysis