Hb_002422_020

Information

Type -
Description -
Location Contig2422: 2598-3781
Sequence    

Annotation

kegg
ID rcu:RCOM_0401100
description hypothetical protein
nr
ID XP_012084519.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JU50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20228 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
2 Hb_013591_010 0.0089350797 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
3 Hb_137612_010 0.0368283796 - - cytochrome P450, putative [Ricinus communis]
4 Hb_010573_030 0.0675245216 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007728_010 0.0701965374 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_041534_010 0.0733395858 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
7 Hb_064692_010 0.0747412185 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_019978_010 0.0871304135 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
9 Hb_003674_010 0.0911808596 - - purine transporter, putative [Ricinus communis]
10 Hb_000134_010 0.0925299983 - - -
11 Hb_004724_290 0.0946000746 transcription factor TF Family: NAC -
12 Hb_011429_010 0.1017784578 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
13 Hb_000028_360 0.1066354722 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_036754_040 0.1110383035 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_003071_040 0.1140389101 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
16 Hb_002006_110 0.1152138703 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
17 Hb_010136_020 0.1176718849 - - stress-induced receptor-like kinase [Medicago truncatula]
18 Hb_098175_010 0.1184960226 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_010012_020 0.1195153838 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003602_080 0.1209233258 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]

Gene co-expression network

sample Hb_002422_020 Hb_002422_020 Hb_013591_010 Hb_013591_010 Hb_002422_020--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_002422_020--Hb_137612_010 Hb_010573_030 Hb_010573_030 Hb_002422_020--Hb_010573_030 Hb_007728_010 Hb_007728_010 Hb_002422_020--Hb_007728_010 Hb_041534_010 Hb_041534_010 Hb_002422_020--Hb_041534_010 Hb_064692_010 Hb_064692_010 Hb_002422_020--Hb_064692_010 Hb_013591_010--Hb_137612_010 Hb_013591_010--Hb_064692_010 Hb_013591_010--Hb_041534_010 Hb_013591_010--Hb_010573_030 Hb_013591_010--Hb_007728_010 Hb_137612_010--Hb_007728_010 Hb_000134_010 Hb_000134_010 Hb_137612_010--Hb_000134_010 Hb_137612_010--Hb_041534_010 Hb_137612_010--Hb_064692_010 Hb_010573_030--Hb_007728_010 Hb_010573_030--Hb_137612_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_007728_010--Hb_000134_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020 Hb_041534_010--Hb_064692_010 Hb_000338_020 Hb_000338_020 Hb_041534_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_041534_010--Hb_157957_010 Hb_064692_010--Hb_000338_020 Hb_064692_010--Hb_157957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.572326 0.109413 0.250196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis