Hb_002422_030

Information

Type -
Description -
Location Contig2422: 5874-6925
Sequence    

Annotation

kegg
ID mdm:103416359
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID KHG17189.1
description E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A0B0NZ85
description E3 ubiquitin-protein ligase UPL5-like protein OS=Gossypium arboreum GN=F383_23085 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_030 0.0 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
2 Hb_161045_010 0.1297827264 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
3 Hb_001814_100 0.1348066008 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
4 Hb_000840_230 0.1454166084 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
5 Hb_004162_030 0.1485043793 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
6 Hb_002820_090 0.1487210004 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
7 Hb_083862_010 0.1517072734 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
8 Hb_000260_130 0.159997054 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_073973_180 0.1614555597 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
10 Hb_005714_140 0.1689016045 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_000087_180 0.1691682895 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009252_140 0.1854383789 - - Spotted leaf protein, putative [Ricinus communis]
13 Hb_017434_020 0.1909614909 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
14 Hb_004242_160 0.1917301722 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
15 Hb_002639_090 0.1941420431 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
16 Hb_001511_270 0.1947797212 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
17 Hb_004968_050 0.1969885866 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
18 Hb_002267_030 0.1971562719 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
19 Hb_000008_170 0.1987361846 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
20 Hb_000072_310 0.1989587446 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]

Gene co-expression network

sample Hb_002422_030 Hb_002422_030 Hb_161045_010 Hb_161045_010 Hb_002422_030--Hb_161045_010 Hb_001814_100 Hb_001814_100 Hb_002422_030--Hb_001814_100 Hb_000840_230 Hb_000840_230 Hb_002422_030--Hb_000840_230 Hb_004162_030 Hb_004162_030 Hb_002422_030--Hb_004162_030 Hb_002820_090 Hb_002820_090 Hb_002422_030--Hb_002820_090 Hb_083862_010 Hb_083862_010 Hb_002422_030--Hb_083862_010 Hb_161045_010--Hb_001814_100 Hb_000260_130 Hb_000260_130 Hb_161045_010--Hb_000260_130 Hb_073973_180 Hb_073973_180 Hb_161045_010--Hb_073973_180 Hb_004242_160 Hb_004242_160 Hb_161045_010--Hb_004242_160 Hb_001098_020 Hb_001098_020 Hb_161045_010--Hb_001098_020 Hb_001814_100--Hb_000260_130 Hb_002267_030 Hb_002267_030 Hb_001814_100--Hb_002267_030 Hb_001814_100--Hb_004162_030 Hb_005714_140 Hb_005714_140 Hb_001814_100--Hb_005714_140 Hb_002639_090 Hb_002639_090 Hb_000840_230--Hb_002639_090 Hb_077562_010 Hb_077562_010 Hb_000840_230--Hb_077562_010 Hb_000072_310 Hb_000072_310 Hb_000840_230--Hb_000072_310 Hb_000318_320 Hb_000318_320 Hb_000840_230--Hb_000318_320 Hb_005588_140 Hb_005588_140 Hb_000840_230--Hb_005588_140 Hb_009393_010 Hb_009393_010 Hb_000840_230--Hb_009393_010 Hb_004108_200 Hb_004108_200 Hb_004162_030--Hb_004108_200 Hb_004162_030--Hb_083862_010 Hb_001031_020 Hb_001031_020 Hb_004162_030--Hb_001031_020 Hb_004162_030--Hb_161045_010 Hb_011805_060 Hb_011805_060 Hb_004162_030--Hb_011805_060 Hb_002820_090--Hb_002267_030 Hb_002820_090--Hb_005714_140 Hb_002820_090--Hb_000260_130 Hb_009787_020 Hb_009787_020 Hb_002820_090--Hb_009787_020 Hb_000087_180 Hb_000087_180 Hb_002820_090--Hb_000087_180 Hb_107495_050 Hb_107495_050 Hb_083862_010--Hb_107495_050 Hb_012423_020 Hb_012423_020 Hb_083862_010--Hb_012423_020 Hb_083862_010--Hb_002639_090 Hb_083862_010--Hb_000072_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.974879 0.0386432 0.276917 0 0.0441359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0916386

CAGE analysis