Hb_002422_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig2422: 19451-31619
Sequence    

Annotation

kegg
ID rcu:RCOM_0496850
description U2 snrnp auxiliary factor, small subunit, putative
nr
ID XP_012066743.1
description PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9SY74
description Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2
trembl
ID A0A067L1Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00298 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger ccch domain-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25332: 23128-23268 , PASA_asmbl_25334: 27585-28004 , PASA_asmbl_25335: 28086-28911 , PASA_asmbl_25338: 30836-30998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
2 Hb_001417_050 0.0599288722 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
3 Hb_004453_110 0.061894836 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
4 Hb_001493_040 0.0635019647 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
5 Hb_000152_260 0.0667472372 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
6 Hb_005332_020 0.0702371593 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_000010_360 0.0737874141 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
8 Hb_000896_080 0.0750447656 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
9 Hb_010315_090 0.0753828532 - - suppressor of ty, putative [Ricinus communis]
10 Hb_000796_190 0.0762060774 - - hypothetical protein F383_31148 [Gossypium arboreum]
11 Hb_148909_030 0.0764527211 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
12 Hb_001623_480 0.077452089 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
13 Hb_002078_100 0.0778597553 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
14 Hb_000714_050 0.0788127822 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
15 Hb_002749_110 0.0792896465 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
16 Hb_002174_020 0.0793945905 - - ring finger protein, putative [Ricinus communis]
17 Hb_000347_570 0.07973013 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
18 Hb_004429_160 0.0804273939 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
19 Hb_007307_020 0.0807341086 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000329_130 0.0814271619 - - beta-tubulin cofactor d, putative [Ricinus communis]

Gene co-expression network

sample Hb_002422_050 Hb_002422_050 Hb_001417_050 Hb_001417_050 Hb_002422_050--Hb_001417_050 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_001493_040 Hb_001493_040 Hb_002422_050--Hb_001493_040 Hb_000152_260 Hb_000152_260 Hb_002422_050--Hb_000152_260 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_001493_040--Hb_010315_090 Hb_001493_040--Hb_000160_290 Hb_002749_110 Hb_002749_110 Hb_000152_260--Hb_002749_110 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_005332_020--Hb_002374_260 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70737 7.59471 4.90112 4.07366 10.7138 10.9364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03123 4.10756 3.03717 7.21102 6.85232

CAGE analysis