Hb_002422_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2422: 40301-43564
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_060 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_003404_030 0.0891218447 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_000161_030 0.0967153469 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
4 Hb_000172_400 0.1087876603 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_002903_070 0.1088513795 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
6 Hb_000230_110 0.1131389467 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
7 Hb_002477_260 0.1154655899 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
8 Hb_000078_130 0.1156176711 - - -
9 Hb_000984_180 0.1182988168 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
10 Hb_003747_240 0.1196353048 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
11 Hb_026048_100 0.122454198 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
12 Hb_001454_060 0.1230702725 - - uncharacterized protein LOC100527252 [Glycine max]
13 Hb_011174_070 0.1238348929 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
14 Hb_002377_050 0.1242054856 - - Agmatine deiminase, putative [Ricinus communis]
15 Hb_000057_060 0.1246262569 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
16 Hb_009510_030 0.1254539619 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
17 Hb_001433_170 0.1257414154 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
18 Hb_006029_010 0.1278117894 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
19 Hb_000005_050 0.128096868 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
20 Hb_005227_070 0.1292981859 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002422_060 Hb_002422_060 Hb_003404_030 Hb_003404_030 Hb_002422_060--Hb_003404_030 Hb_000161_030 Hb_000161_030 Hb_002422_060--Hb_000161_030 Hb_000172_400 Hb_000172_400 Hb_002422_060--Hb_000172_400 Hb_002903_070 Hb_002903_070 Hb_002422_060--Hb_002903_070 Hb_000230_110 Hb_000230_110 Hb_002422_060--Hb_000230_110 Hb_002477_260 Hb_002477_260 Hb_002422_060--Hb_002477_260 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_006029_010 Hb_006029_010 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030 Hb_000427_030 Hb_000427_030 Hb_002903_070--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_002903_070--Hb_011174_070 Hb_003747_240 Hb_003747_240 Hb_002903_070--Hb_003747_240 Hb_003057_120 Hb_003057_120 Hb_002903_070--Hb_003057_120 Hb_006551_010 Hb_006551_010 Hb_002903_070--Hb_006551_010 Hb_000230_110--Hb_003404_030 Hb_012055_020 Hb_012055_020 Hb_000230_110--Hb_012055_020 Hb_000230_110--Hb_176022_020 Hb_000230_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000230_110--Hb_004156_060 Hb_000088_040 Hb_000088_040 Hb_000230_110--Hb_000088_040 Hb_002477_260--Hb_127979_010 Hb_002903_110 Hb_002903_110 Hb_002477_260--Hb_002903_110 Hb_011496_010 Hb_011496_010 Hb_002477_260--Hb_011496_010 Hb_002477_260--Hb_003404_030 Hb_001936_050 Hb_001936_050 Hb_002477_260--Hb_001936_050 Hb_002477_260--Hb_000057_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.18511 2.73704 0.27849 1.2363 11.5214 8.77907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.51909 3.90469 8.0394 0.790544 0.490784

CAGE analysis