Hb_002422_070

Information

Type -
Description -
Location Contig2422: 59200-59655
Sequence    

Annotation

kegg
ID mdm:103442910
description putative protein TPRXL
nr
ID XP_008379918.1
description PREDICTED: putative protein TPRXL [Malus domestica]
swissprot
ID -
description -
trembl
ID B9MXU9
description Proline-rich family protein OS=Populus trichocarpa GN=POPTR_0017s06820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25342: 59349-59923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002422_070 0.0 - - PREDICTED: putative protein TPRXL [Malus domestica]
2 Hb_006277_110 0.1107474373 - - protein with unknown function [Ricinus communis]
3 Hb_012794_010 0.1151256437 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
4 Hb_000300_290 0.123452157 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
5 Hb_005092_060 0.1300026101 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_000260_810 0.1335128304 - - -
7 Hb_000346_040 0.1339287159 - - -
8 Hb_006429_010 0.1343238634 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
9 Hb_064441_010 0.1353234759 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
10 Hb_000497_110 0.1376400257 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
11 Hb_000976_410 0.1376982061 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
12 Hb_000580_190 0.1378331168 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
13 Hb_116894_020 0.1385015422 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
14 Hb_005490_030 0.1391139741 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
15 Hb_019654_030 0.1391687748 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
16 Hb_002284_230 0.139238548 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
17 Hb_003697_030 0.1394030907 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
18 Hb_001009_170 0.1422256758 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_001619_070 0.1426583931 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
20 Hb_006162_010 0.1427745621 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]

Gene co-expression network

sample Hb_002422_070 Hb_002422_070 Hb_006277_110 Hb_006277_110 Hb_002422_070--Hb_006277_110 Hb_012794_010 Hb_012794_010 Hb_002422_070--Hb_012794_010 Hb_000300_290 Hb_000300_290 Hb_002422_070--Hb_000300_290 Hb_005092_060 Hb_005092_060 Hb_002422_070--Hb_005092_060 Hb_000260_810 Hb_000260_810 Hb_002422_070--Hb_000260_810 Hb_000346_040 Hb_000346_040 Hb_002422_070--Hb_000346_040 Hb_000392_190 Hb_000392_190 Hb_006277_110--Hb_000392_190 Hb_002284_230 Hb_002284_230 Hb_006277_110--Hb_002284_230 Hb_152371_010 Hb_152371_010 Hb_006277_110--Hb_152371_010 Hb_019654_030 Hb_019654_030 Hb_006277_110--Hb_019654_030 Hb_006907_130 Hb_006907_130 Hb_006277_110--Hb_006907_130 Hb_003940_040 Hb_003940_040 Hb_006277_110--Hb_003940_040 Hb_012794_010--Hb_005092_060 Hb_012794_010--Hb_000260_810 Hb_011537_110 Hb_011537_110 Hb_012794_010--Hb_011537_110 Hb_011457_090 Hb_011457_090 Hb_012794_010--Hb_011457_090 Hb_001158_050 Hb_001158_050 Hb_012794_010--Hb_001158_050 Hb_006162_010 Hb_006162_010 Hb_000300_290--Hb_006162_010 Hb_002111_040 Hb_002111_040 Hb_000300_290--Hb_002111_040 Hb_002842_020 Hb_002842_020 Hb_000300_290--Hb_002842_020 Hb_000053_100 Hb_000053_100 Hb_000300_290--Hb_000053_100 Hb_000023_090 Hb_000023_090 Hb_000300_290--Hb_000023_090 Hb_001006_020 Hb_001006_020 Hb_000300_290--Hb_001006_020 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_000696_310 Hb_000696_310 Hb_000260_810--Hb_000696_310 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_181600_010 Hb_181600_010 Hb_000260_810--Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_000260_810--Hb_048476_050 Hb_005183_120 Hb_005183_120 Hb_000260_810--Hb_005183_120 Hb_002301_230 Hb_002301_230 Hb_000260_810--Hb_002301_230 Hb_000346_040--Hb_001006_020 Hb_000346_040--Hb_001235_030 Hb_006420_100 Hb_006420_100 Hb_000346_040--Hb_006420_100 Hb_000072_180 Hb_000072_180 Hb_000346_040--Hb_000072_180 Hb_001234_100 Hb_001234_100 Hb_000346_040--Hb_001234_100 Hb_001390_130 Hb_001390_130 Hb_000346_040--Hb_001390_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7671 0.776257 1.12179 4.44264 1.43995 6.6178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43029 4.31178 6.74652 5.63778 5.17978

CAGE analysis