Hb_002431_050

Information

Type -
Description -
Location Contig2431: 84230-96485
Sequence    

Annotation

kegg
ID rcu:RCOM_0559590
description protein phosphatase 2c, putative (EC:3.1.4.12 3.1.3.16)
nr
ID XP_012066145.1
description PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
swissprot
ID Q8VZN9
description Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1
trembl
ID B9S2N7
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0559590 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable protein phosphatase 2c 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25418: 84205-90843 , PASA_asmbl_25420: 93183-96494 , PASA_asmbl_25421: 94647-95573 , PASA_asmbl_25423: 94521-95029
cDNA
(Sanger)
(ID:Location)		 002_G11.ab1: 87200-90839 , 021_K15.ab1: 94037-96449

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002431_050 0.0 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
2 Hb_010672_060 0.0366079366 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_002830_020 0.0594954396 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_003893_050 0.0604024111 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
5 Hb_000283_110 0.060778132 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
6 Hb_007416_020 0.0611170468 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
7 Hb_029584_060 0.0661778619 - - Grave disease carrier protein, putative [Ricinus communis]
8 Hb_000173_220 0.0684928774 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
9 Hb_003226_210 0.0732160622 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
10 Hb_000699_160 0.0743634599 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
11 Hb_003053_030 0.0756622354 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
12 Hb_004459_040 0.0757321223 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
13 Hb_001633_030 0.0761764585 - - -
14 Hb_000312_090 0.0769115441 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
15 Hb_007304_070 0.0769564735 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
16 Hb_003455_040 0.0770649678 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
17 Hb_001191_090 0.0778242879 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
18 Hb_002631_020 0.0791982492 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
19 Hb_003125_150 0.0792229118 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
20 Hb_005063_050 0.0797556348 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002431_050 Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_007416_020 Hb_007416_020 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_010672_060--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_010672_060--Hb_000111_340 Hb_010672_060--Hb_007416_020 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_000201_120 Hb_000201_120 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150 Hb_003893_050--Hb_005063_050 Hb_003893_050--Hb_000283_110 Hb_003203_040 Hb_003203_040 Hb_003893_050--Hb_003203_040 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_007416_020--Hb_003226_210 Hb_007416_020--Hb_029584_060 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_029584_060--Hb_000201_120 Hb_029584_060--Hb_001080_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6825 6.8355 9.78572 16.2222 14.8341 18.0859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.6449 60.9755 27.2974 9.13623 10.0458

CAGE analysis