Hb_002431_090

Information

Type -
Description -
Location Contig2431: 122090-125738
Sequence    

Annotation

kegg
ID rcu:RCOM_0559550
description hypothetical protein
nr
ID XP_002520252.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2N3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0559550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25424: 121950-123171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002431_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_189034_010 0.0880456846 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002477_080 0.1060683406 - - hypothetical protein RCOM_0653450 [Ricinus communis]
4 Hb_000816_050 0.1078741849 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_003835_030 0.1084051851 - - glycosyltransferase, partial [Arabidopsis thaliana]
6 Hb_000477_010 0.1089540722 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
7 Hb_008092_020 0.1121559215 - - transcription factor, putative [Ricinus communis]
8 Hb_000028_460 0.1162388499 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
9 Hb_050898_010 0.116842047 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_064047_010 0.1174574744 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005784_020 0.1192121776 - - Protein MKS1, putative [Ricinus communis]
12 Hb_000137_030 0.121172689 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
13 Hb_103541_010 0.1232988284 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
14 Hb_183209_020 0.1284733263 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_000589_330 0.1296029551 - - kinase, putative [Ricinus communis]
16 Hb_000116_290 0.1339516951 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
17 Hb_174101_010 0.1342750174 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_001913_030 0.1347460618 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_003025_150 0.1359870918 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002325_050 0.1360522017 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]

Gene co-expression network

sample Hb_002431_090 Hb_002431_090 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_002477_080 Hb_002477_080 Hb_002431_090--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_002431_090--Hb_000816_050 Hb_003835_030 Hb_003835_030 Hb_002431_090--Hb_003835_030 Hb_000477_010 Hb_000477_010 Hb_002431_090--Hb_000477_010 Hb_008092_020 Hb_008092_020 Hb_002431_090--Hb_008092_020 Hb_000137_030 Hb_000137_030 Hb_189034_010--Hb_000137_030 Hb_002325_050 Hb_002325_050 Hb_189034_010--Hb_002325_050 Hb_005784_020 Hb_005784_020 Hb_189034_010--Hb_005784_020 Hb_183209_020 Hb_183209_020 Hb_189034_010--Hb_183209_020 Hb_050898_010 Hb_050898_010 Hb_189034_010--Hb_050898_010 Hb_000899_060 Hb_000899_060 Hb_002477_080--Hb_000899_060 Hb_001823_070 Hb_001823_070 Hb_002477_080--Hb_001823_070 Hb_002477_080--Hb_000816_050 Hb_103541_010 Hb_103541_010 Hb_002477_080--Hb_103541_010 Hb_000028_460 Hb_000028_460 Hb_002477_080--Hb_000028_460 Hb_064047_010 Hb_064047_010 Hb_000816_050--Hb_064047_010 Hb_000816_050--Hb_050898_010 Hb_000325_010 Hb_000325_010 Hb_000816_050--Hb_000325_010 Hb_002272_070 Hb_002272_070 Hb_000816_050--Hb_002272_070 Hb_003835_030--Hb_008092_020 Hb_001013_050 Hb_001013_050 Hb_003835_030--Hb_001013_050 Hb_002000_130 Hb_002000_130 Hb_003835_030--Hb_002000_130 Hb_000589_330 Hb_000589_330 Hb_003835_030--Hb_000589_330 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_000472_020 Hb_000472_020 Hb_003835_030--Hb_000472_020 Hb_000477_010--Hb_003835_030 Hb_000477_010--Hb_002477_080 Hb_000477_010--Hb_000899_060 Hb_000477_010--Hb_008092_020 Hb_000477_010--Hb_002000_130 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_008092_020--Hb_002000_130 Hb_008092_020--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150938 77.7039 20.8104 81.287 0.0168113 0.0963704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.880447 0.933501 0.336924 36.6271 24.5566

CAGE analysis